RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 CNTNAP1P78357 1384 aa14.2□□□□□ -0.14
SNCA-202ENST00000345009 RPAP1Q9BWH6 1393 aaPredicted RBP14.2□□□□□ -0.14
SNCA-202ENST00000345009 ECM29Q5VYK3 1845 aa14.2□□□□□ -0.14
SNCA-202ENST00000345009 DOCK2Q92608 1830 aa14.2□□□□□ -0.14
SNCA-202ENST00000345009 MAST2Q6P0Q8 1798 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 MYO5AQ9Y4I1 1855 aaKnown RBP14.19□□□□□ -0.14
SNCA-202ENST00000345009 POTEFA5A3E0 1075 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 UNCXA6NJT0 531 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 POTEB2H3BUK9 544 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 APPP05067 770 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 HLA-DOAP06340 250 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 MCMDC2Q4G0Z9 681 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 BMP2KLQ5H9B9 411 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 LCORLQ8N3X6 602 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 OSBP2Q969R2 916 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 TEPSINQ96N21 525 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 STRBPQ96SI9 672 aaKnown RBP14.19□□□□□ -0.14
SNCA-202ENST00000345009 DDX4Q9NQI0 724 aaKnown RBP14.19□□□□□ -0.14
SNCA-202ENST00000345009 PI4KBQ9UBF8 816 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 SLC4A4Q9Y6R1 1079 aa14.19□□□□□ -0.14
SNCA-202ENST00000345009 FLT1P17948 1338 aa14.18□□□□□ -0.14
SNCA-202ENST00000345009 GPAA1O43292 621 aa14.18□□□□□ -0.14
SNCA-202ENST00000345009 POLR3DP05423 398 aaPredicted RBP14.18□□□□□ -0.14
SNCA-202ENST00000345009 FMR1Q06787 632 aaKnown RBP eCLIP14.18□□□□□ -0.14
SNCA-202ENST00000345009 GIMAP6Q6P9H5 292 aa14.18□□□□□ -0.14
SNCA-202ENST00000345009 CASC1Q6TDU7 716 aa14.18□□□□□ -0.14
SNCA-202ENST00000345009 DLK2Q6UY11 383 aa14.18□□□□□ -0.14
SNCA-202ENST00000345009 FOXP4Q8IVH2 680 aaPredicted RBP14.18□□□□□ -0.14
SNCA-202ENST00000345009 ZNF341Q9BYN7 854 aa14.18□□□□□ -0.14
SNCA-202ENST00000345009 OCEL1Q9H607 264 aa14.18□□□□□ -0.14
SNCA-202ENST00000345009 MCM9Q9NXL9 1143 aa14.18□□□□□ -0.14
SNCA-202ENST00000345009 PATL2C9JE40 543 aaKnown RBP14.17□□□□□ -0.14
SNCA-202ENST00000345009 GSPT1P15170 499 aaKnown RBP14.17□□□□□ -0.14
SNCA-202ENST00000345009 HUNKP57058 714 aa14.17□□□□□ -0.14
SNCA-202ENST00000345009 IRX5P78411 483 aaPredicted RBP14.17□□□□□ -0.14
SNCA-202ENST00000345009 SLFNL1Q499Z3 407 aa14.17□□□□□ -0.14
SNCA-202ENST00000345009 ZFPM1Q8IX07 1006 aa14.17□□□□□ -0.14
SNCA-202ENST00000345009 CRACR2BQ8N4Y2 399 aaPredicted RBP14.17□□□□□ -0.14
SNCA-202ENST00000345009 HHIPL1Q96JK4 782 aa14.17□□□□□ -0.14
SNCA-202ENST00000345009 HERC5Q9UII4 1024 aaKnown RBP14.17□□□□□ -0.14
SNCA-202ENST00000345009 ANGEL1Q9UNK9 670 aaKnown RBP14.17□□□□□ -0.14
SNCA-202ENST00000345009 ATRNL1Q5VV63 1379 aa14.17□□□□□ -0.14
SNCA-202ENST00000345009 AK9Q5TCS8 1911 aa14.17□□□□□ -0.14
SNCA-202ENST00000345009 MYH7P12883 1935 aa14.16□□□□□ -0.14
SNCA-202ENST00000345009 DDTLA6NHG4 134 aaPredicted RBP14.16□□□□□ -0.14
SNCA-202ENST00000345009 TBC1D12O60347 775 aa14.16□□□□□ -0.14
SNCA-202ENST00000345009 NMIQ13287 307 aaPredicted RBP14.16□□□□□ -0.14
SNCA-202ENST00000345009 PRKG1Q13976 671 aa14.16□□□□□ -0.14
SNCA-202ENST00000345009 DEFB115Q30KQ5 88 aa14.16□□□□□ -0.14
SNCA-202ENST00000345009 CWC27Q6UX04 472 aaKnown RBP14.16□□□□□ -0.14
SNCA-202ENST00000345009 MIGA2Q7L4E1 593 aa14.16□□□□□ -0.14
SNCA-202ENST00000345009 SAPCD2Q86UD0 394 aa14.16□□□□□ -0.14
SNCA-202ENST00000345009 EFCAB3Q8N7B9 438 aa14.16□□□□□ -0.14
SNCA-202ENST00000345009 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.16□□□□□ -0.14
SNCA-202ENST00000345009 DCP1AQ9NPI6 582 aaPredicted RBP14.16□□□□□ -0.14
SNCA-202ENST00000345009 SAP30BPQ9UHR5 308 aaKnown RBP14.16□□□□□ -0.14
SNCA-202ENST00000345009 PALD1Q9ULE6 856 aa14.16□□□□□ -0.14
SNCA-202ENST00000345009 CSADQ9Y600 493 aa14.16□□□□□ -0.14
SNCA-202ENST00000345009 TLL2Q9Y6L7 1015 aa14.16□□□□□ -0.14
SNCA-202ENST00000345009 TRPM7Q96QT4 1865 aa14.15□□□□□ -0.14
SNCA-202ENST00000345009 COL2A1P02458 1487 aaPredicted RBP14.15□□□□□ -0.14
SNCA-202ENST00000345009 M0R2C6 588 aa14.15□□□□□ -0.14
SNCA-202ENST00000345009 USP2O75604 605 aaPredicted RBP14.15□□□□□ -0.14
SNCA-202ENST00000345009 CHGBP05060 677 aa14.15□□□□□ -0.14
SNCA-202ENST00000345009 ECE1P42892 770 aa14.15□□□□□ -0.14
SNCA-202ENST00000345009 TDO2P48775 406 aa14.15□□□□□ -0.14
SNCA-202ENST00000345009 MAP3K9P80192 1104 aa14.15□□□□□ -0.14
SNCA-202ENST00000345009 MAP3K11Q16584 847 aa14.15□□□□□ -0.14
SNCA-202ENST00000345009 PAXIP1Q6ZW49 1069 aaPredicted RBP14.15□□□□□ -0.14
SNCA-202ENST00000345009 ANKRD13AQ8IZ07 590 aa14.15□□□□□ -0.14
SNCA-202ENST00000345009 SDR42E1Q8WUS8 393 aa14.15□□□□□ -0.14
SNCA-202ENST00000345009 CCDC102AQ96A19 550 aa14.15□□□□□ -0.14
SNCA-202ENST00000345009 SLC10A4Q96EP9 437 aa14.15□□□□□ -0.14
SNCA-202ENST00000345009 FAM227BQ96M60 508 aa14.15□□□□□ -0.14
SNCA-202ENST00000345009 A0A0D9SFI3 127 aa14.14□□□□□ -0.15
SNCA-202ENST00000345009 UBE2Q2LH0YL09 131 aa14.14□□□□□ -0.15
SNCA-202ENST00000345009 PRKAB2O43741 272 aa14.14□□□□□ -0.15
SNCA-202ENST00000345009 MAP3K10Q02779 954 aa14.14□□□□□ -0.15
SNCA-202ENST00000345009 KLRG1Q96E93 195 aa14.14□□□□□ -0.15
SNCA-202ENST00000345009 SEC62Q99442 399 aaKnown RBP14.14□□□□□ -0.15
SNCA-202ENST00000345009 NAPBQ9H115 298 aa14.14□□□□□ -0.15
SNCA-202ENST00000345009 EHD4Q9H223 541 aa14.14□□□□□ -0.15
SNCA-202ENST00000345009 ZNF287Q9HBT7 754 aa14.14□□□□□ -0.15
SNCA-202ENST00000345009 ARPP21Q9UBL0 812 aaPredicted RBP14.14□□□□□ -0.15
SNCA-202ENST00000345009 MKRN1Q9UHC7 482 aaKnown RBP14.14□□□□□ -0.15
SNCA-202ENST00000345009 SERPINB13Q9UIV8 391 aa14.14□□□□□ -0.15
SNCA-202ENST00000345009 GSG1L2A8MUP6 293 aa14.13□□□□□ -0.15
SNCA-202ENST00000345009 SLC3A2P08195 630 aaKnown RBP14.13□□□□□ -0.15
SNCA-202ENST00000345009 CHMLP26374 656 aa14.13□□□□□ -0.15
SNCA-202ENST00000345009 ZNF157P51786 506 aaPredicted RBP14.13□□□□□ -0.15
SNCA-202ENST00000345009 LDLRAD1Q5T700 205 aa14.13□□□□□ -0.15
SNCA-202ENST00000345009 RGMBQ6NW40 437 aa14.13□□□□□ -0.15
SNCA-202ENST00000345009 SH3BP5LQ7L8J4 393 aa14.13□□□□□ -0.15
SNCA-202ENST00000345009 WRNIP1Q96S55 665 aa14.13□□□□□ -0.15
SNCA-202ENST00000345009 CCDC171Q6TFL3 1326 aa14.13□□□□□ -0.15
SNCA-202ENST00000345009 RAD50Q92878 1312 aa14.13□□□□□ -0.15
SNCA-202ENST00000345009 RASSF10A6NK89 507 aa14.12□□□□□ -0.15
SNCA-202ENST00000345009 USP17L12C9JPN9 530 aa14.12□□□□□ -0.15
SNCA-202ENST00000345009 USP17L21D6R901 530 aa14.12□□□□□ -0.15
SNCA-202ENST00000345009 CTNND1O60716 968 aaKnown RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms