RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 FAM163AQ96GL9 167 aaPredicted RBP14.94□□□□□ -0.02
CLK3-201ENST00000345005 LY9Q9HBG7 655 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 HPS5Q9UPZ3 1129 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 FGRP09769 529 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 PLCG2P16885 1265 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 GTF2IP78347 998 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 DIXDC1Q155Q3 683 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 NFXL1Q6ZNB6 911 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 NKX2-3Q8TAU0 364 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 MYH1P12882 1939 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 MYH15Q9Y2K3 1946 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 FOCADQ5VW36 1801 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 GPR75-ASB3A0A0A6YYF3 556 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 CCDC69A6NI79 296 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 H3BQV1 296 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 CPLX1O14810 134 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 CHRNA5P30532 468 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 USP5P45974 858 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 IFFO2Q5TF58 517 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 CC2D2BQ6DHV5 1058 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 APOA5Q6Q788 366 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 SYNE3Q6ZMZ3 975 aa14.93□□□□□ -0.02
CLK3-201ENST00000345005 ZBTB43O43298 467 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 UBE2HP62256 183 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 WTAPQ15007 396 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 AMOTL1Q8IY63 956 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 STK11IPQ8N1F8 1099 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 SH3RF3Q8TEJ3 882 aaPredicted RBP14.92□□□□□ -0.02
CLK3-201ENST00000345005 UBAC1Q9BSL1 405 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 RTFDC1Q9BY42 306 aaPredicted RBP14.92□□□□□ -0.02
CLK3-201ENST00000345005 SLC12A7Q9Y666 1083 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 CYP2D7A0A087X1C5 515 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 ORC4O43929 436 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 NT5C2P49902 561 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 METAP2P50579 478 aaKnown RBP eCLIP14.92□□□□□ -0.02
CLK3-201ENST00000345005 FOXD4L6Q3SYB3 417 aaPredicted RBP14.92□□□□□ -0.02
CLK3-201ENST00000345005 GRIPAP1Q4V328 841 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 CPLX2Q6PUV4 134 aaKnown RBP14.92□□□□□ -0.02
CLK3-201ENST00000345005 FOXD4L3Q6VB84 417 aaPredicted RBP14.92□□□□□ -0.02
CLK3-201ENST00000345005 CDC37L1Q7L3B6 337 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 PODNQ7Z5L7 613 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 CHAMP1Q96JM3 812 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 MCM9Q9NXL9 1143 aa14.92□□□□□ -0.02
CLK3-201ENST00000345005 MKRN1Q9UHC7 482 aaKnown RBP14.92□□□□□ -0.02
CLK3-201ENST00000345005 KIF13BQ9NQT8 1826 aa14.91□□□□□ -0.02
CLK3-201ENST00000345005 CDKL5O76039 1030 aa14.91□□□□□ -0.02
CLK3-201ENST00000345005 PDE4BQ07343 736 aa14.91□□□□□ -0.02
CLK3-201ENST00000345005 DOK7Q18PE1 504 aa14.91□□□□□ -0.02
CLK3-201ENST00000345005 PDGFDQ9GZP0 370 aaPredicted RBP14.91□□□□□ -0.02
CLK3-201ENST00000345005 FAM13BQ9NYF5 915 aa14.91□□□□□ -0.02
CLK3-201ENST00000345005 C10orf71Q711Q0 1435 aa14.91□□□□□ -0.02
CLK3-201ENST00000345005 MYH6P13533 1939 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 GAKO14976 1311 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 RANBP6O60518 1105 aaKnown RBP14.9□□□□□ -0.02
CLK3-201ENST00000345005 BTDP43251 543 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 RCAN1P53805 252 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 UTP14CQ5TAP6 766 aaKnown RBP14.9□□□□□ -0.02
CLK3-201ENST00000345005 USP48Q86UV5 1035 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 IQCA1Q86XH1 822 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 RGS22Q8NE09 1264 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 SUPT20HQ8NEM7 779 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 MYRIPQ8NFW9 859 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 C7orf43Q8WVR3 580 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 PIBF1Q8WXW3 757 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 FBXW7Q969H0 707 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 ZSCAN16Q9H4T2 348 aaPredicted RBP14.9□□□□□ -0.02
CLK3-201ENST00000345005 SENP2Q9HC62 589 aa14.9□□□□□ -0.02
CLK3-201ENST00000345005 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.9□□□□□ -0.02
CLK3-201ENST00000345005 C12orf60Q5U649 245 aa14.89□□□□□ -0.03
CLK3-201ENST00000345005 TGFBRAP1Q8WUH2 860 aa14.89□□□□□ -0.03
CLK3-201ENST00000345005 ZKSCAN3Q9BRR0 538 aa14.89□□□□□ -0.03
CLK3-201ENST00000345005 CNPY2Q9Y2B0 182 aa14.89□□□□□ -0.03
CLK3-201ENST00000345005 NID2Q14112 1375 aa14.89□□□□□ -0.03
CLK3-201ENST00000345005 GOLGA8AA7E2F4 631 aa14.89□□□□□ -0.03
CLK3-201ENST00000345005 USP17L8P0C7I0 530 aa14.89□□□□□ -0.03
CLK3-201ENST00000345005 FDPSP14324 419 aaKnown RBP14.89□□□□□ -0.03
CLK3-201ENST00000345005 FERMT3Q86UX7 667 aa14.89□□□□□ -0.03
CLK3-201ENST00000345005 MICU3Q86XE3 530 aa14.89□□□□□ -0.03
CLK3-201ENST00000345005 RAB11FIP4Q86YS3 637 aa14.89□□□□□ -0.03
CLK3-201ENST00000345005 TEX11Q8IYF3 940 aa14.89□□□□□ -0.03
CLK3-201ENST00000345005 ZSCAN10Q96SZ4 725 aaPredicted RBP14.89□□□□□ -0.03
CLK3-201ENST00000345005 ORC3Q9UBD5 711 aaPredicted RBP14.89□□□□□ -0.03
CLK3-201ENST00000345005 ECM29Q5VYK3 1845 aa14.89□□□□□ -0.03
CLK3-201ENST00000345005 GOLGA6L6A8MZA4 724 aa14.88□□□□□ -0.03
CLK3-201ENST00000345005 SMIM22K7EJ46 135 aa14.88□□□□□ -0.03
CLK3-201ENST00000345005 GTF2F1P35269 517 aaKnown RBP eCLIP14.88□□□□□ -0.03
CLK3-201ENST00000345005 KRT85P78386 507 aa14.88□□□□□ -0.03
CLK3-201ENST00000345005 DNM1Q05193 864 aaKnown RBP14.88□□□□□ -0.03
CLK3-201ENST00000345005 SEC23AQ15436 765 aa14.88□□□□□ -0.03
CLK3-201ENST00000345005 TTLL6Q8N841 843 aa14.88□□□□□ -0.03
CLK3-201ENST00000345005 ZNF219Q9P2Y4 722 aaPredicted RBP14.88□□□□□ -0.03
CLK3-201ENST00000345005 TNKSO95271 1327 aa14.88□□□□□ -0.03
CLK3-201ENST00000345005 SCN9AQ15858 1988 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 ROBO3Q96MS0 1386 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 CCDC196A0A1B0GTZ2 297 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 CYP2D6P10635 497 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 ADD1P35611 737 aaKnown RBP14.87□□□□□ -0.03
CLK3-201ENST00000345005 FKBP1AP62942 108 aaKnown RBP14.87□□□□□ -0.03
CLK3-201ENST00000345005 PPP2R5BQ15173 497 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 DNTTIP2Q5QJE6 756 aaKnown RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms