RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 BICD2Q8TD16 824 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 ZNF384Q8TF68 577 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 PCDHAC2Q9Y5I4 1007 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 ZBTB43O43298 467 aa15.17■□□□□ 0.02
COL18A1-201ENST00000342220 PPIP5K2O43314 1243 aa15.17■□□□□ 0.02
COL18A1-201ENST00000342220 ANTXR2P58335 489 aa15.17■□□□□ 0.02
COL18A1-201ENST00000342220 CSPP1Q1MSJ5 1256 aa15.17■□□□□ 0.02
COL18A1-201ENST00000342220 COL4A1P02462 1669 aa15.17■□□□□ 0.02
COL18A1-201ENST00000342220 THSD7AQ9UPZ6 1657 aa15.17■□□□□ 0.02
COL18A1-201ENST00000342220 NPR1P16066 1061 aa15.17■□□□□ 0.02
COL18A1-201ENST00000342220 ALDH1B1P30837 517 aa15.17■□□□□ 0.02
COL18A1-201ENST00000342220 SF3A1Q15459 793 aaKnown RBP15.17■□□□□ 0.02
COL18A1-201ENST00000342220 GIMAP6Q6P9H5 292 aa15.17■□□□□ 0.02
COL18A1-201ENST00000342220 VAT1LQ9HCJ6 419 aa15.17■□□□□ 0.02
COL18A1-201ENST00000342220 ANGEL1Q9UNK9 670 aaKnown RBP15.17■□□□□ 0.02
COL18A1-201ENST00000342220 BAG3O95817 575 aa15.16■□□□□ 0.02
COL18A1-201ENST00000342220 SPTY2D1Q68D10 685 aaPredicted RBP15.16■□□□□ 0.02
COL18A1-201ENST00000342220 CPLX2Q6PUV4 134 aaKnown RBP15.16■□□□□ 0.02
COL18A1-201ENST00000342220 FLAD1Q8NFF5 587 aa15.16■□□□□ 0.02
COL18A1-201ENST00000342220 MASTLQ96GX5 879 aa15.16■□□□□ 0.02
COL18A1-201ENST00000342220 BCS1LQ9Y276 419 aa15.16■□□□□ 0.02
COL18A1-201ENST00000342220 ATP6V1DQ9Y5K8 247 aa15.16■□□□□ 0.02
COL18A1-201ENST00000342220 ANKRD36CQ5JPF3 1778 aa15.16■□□□□ 0.02
COL18A1-201ENST00000342220 AKAP17AQ02040 695 aaKnown RBP15.16■□□□□ 0.02
COL18A1-201ENST00000342220 NBPF3Q9H094 633 aa15.16■□□□□ 0.02
COL18A1-201ENST00000342220 ZNF277Q9NRM2 450 aaPredicted RBP15.16■□□□□ 0.02
COL18A1-201ENST00000342220 ADCY5O95622 1261 aa15.16■□□□□ 0.02
COL18A1-201ENST00000342220 UVSSAQ2YD98 709 aa15.16■□□□□ 0.02
COL18A1-201ENST00000342220 ZNF771Q7L3S4 317 aaPredicted RBP15.16■□□□□ 0.02
COL18A1-201ENST00000342220 C8orf76Q96K31 380 aa15.16■□□□□ 0.02
COL18A1-201ENST00000342220 KCNB2Q92953 911 aa15.15■□□□□ 0.02
COL18A1-201ENST00000342220 COL5A3P25940 1745 aaPredicted RBP15.15■□□□□ 0.02
COL18A1-201ENST00000342220 PDCP20941 246 aa15.15■□□□□ 0.02
COL18A1-201ENST00000342220 KIAA2012Q0VF49 1180 aa15.15■□□□□ 0.02
COL18A1-201ENST00000342220 IFIT1BQ5T764 474 aaKnown RBP15.15■□□□□ 0.02
COL18A1-201ENST00000342220 IQCA1Q86XH1 822 aa15.15■□□□□ 0.02
COL18A1-201ENST00000342220 CLEC10AQ8IUN9 316 aa15.15■□□□□ 0.02
COL18A1-201ENST00000342220 ZNF444Q8N0Y2 327 aaPredicted RBP15.15■□□□□ 0.02
COL18A1-201ENST00000342220 ESR2Q92731 530 aa15.15■□□□□ 0.02
COL18A1-201ENST00000342220 CPVLQ9H3G5 476 aa15.15■□□□□ 0.02
COL18A1-201ENST00000342220 LARGE2Q8N3Y3 721 aa15.14■□□□□ 0.01
COL18A1-201ENST00000342220 USP17L3A6NCW0 530 aa15.14■□□□□ 0.01
COL18A1-201ENST00000342220 USP17L4A6NCW7 530 aa15.14■□□□□ 0.01
COL18A1-201ENST00000342220 TFAP4Q01664 338 aa15.14■□□□□ 0.01
COL18A1-201ENST00000342220 USP17L1Q7RTZ2 530 aa15.14■□□□□ 0.01
COL18A1-201ENST00000342220 MB21D2Q8IYB1 491 aaPredicted RBP15.14■□□□□ 0.01
COL18A1-201ENST00000342220 DCP1AQ9NPI6 582 aaPredicted RBP15.14■□□□□ 0.01
COL18A1-201ENST00000342220 ZBTB12Q9Y330 459 aaPredicted RBP15.14■□□□□ 0.01
COL18A1-201ENST00000342220 TACC3Q9Y6A5 838 aa15.14■□□□□ 0.01
COL18A1-201ENST00000342220 TNKSO95271 1327 aa15.14■□□□□ 0.01
COL18A1-201ENST00000342220 GNAT2P19087 354 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 TRIM29Q14134 588 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 CERS3Q8IU89 383 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 SPATA32Q96LK8 384 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 CAMKK2Q96RR4 588 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 TTC12Q9H892 705 aaPredicted RBP15.13■□□□□ 0.01
COL18A1-201ENST00000342220 KCNJ14Q9UNX9 436 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 ATP6V0A2Q9Y487 856 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 IARSP41252 1262 aaKnown RBP15.13■□□□□ 0.01
COL18A1-201ENST00000342220 CTR9Q6PD62 1173 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 HOMER1Q86YM7 354 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 NSUN7Q8NE18 718 aaKnown RBP15.13■□□□□ 0.01
COL18A1-201ENST00000342220 ZNF512BQ96KM6 892 aaPredicted RBP15.13■□□□□ 0.01
COL18A1-201ENST00000342220 CLRN2A0PK11 232 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 GOLGA8HP0CJ92 632 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 TSPY3P0CV98 308 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 TSPY8P0CW00 308 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 EXOSC10Q01780 885 aaKnown RBP15.13■□□□□ 0.01
COL18A1-201ENST00000342220 RIOK1Q9BRS2 568 aaKnown RBP15.13■□□□□ 0.01
COL18A1-201ENST00000342220 ALG1Q9BT22 464 aa15.13■□□□□ 0.01
COL18A1-201ENST00000342220 RNF41Q9H4P4 317 aaPredicted RBP15.13■□□□□ 0.01
COL18A1-201ENST00000342220 LDHCP07864 332 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 SLC3A2P08195 630 aaKnown RBP15.12■□□□□ 0.01
COL18A1-201ENST00000342220 DPEP1P16444 411 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 CDC27P30260 824 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 PLCD1P51178 756 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 TAF3Q5VWG9 929 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 FUCA2Q9BTY2 467 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 KRT23Q9C075 422 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 VEZTQ9HBM0 779 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 USP40Q9NVE5 1235 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 ME1P48163 572 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 KRT85P78386 507 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 APOA5Q6Q788 366 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 C17orf53Q8N3J3 647 aaPredicted RBP15.12■□□□□ 0.01
COL18A1-201ENST00000342220 TDRD7Q8NHU6 1098 aaKnown RBP15.12■□□□□ 0.01
COL18A1-201ENST00000342220 TRIM34Q9BYJ4 488 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 KIF3AQ9Y496 699 aa15.12■□□□□ 0.01
COL18A1-201ENST00000342220 RASGRP2Q7LDG7 609 aa15.11■□□□□ 0.01
COL18A1-201ENST00000342220 COL1A1P02452 1464 aaPredicted RBP15.11■□□□□ 0.01
COL18A1-201ENST00000342220 PDE4BQ07343 736 aa15.11■□□□□ 0.01
COL18A1-201ENST00000342220 RTN1Q16799 776 aa15.11■□□□□ 0.01
COL18A1-201ENST00000342220 CRY2Q49AN0 593 aa15.11■□□□□ 0.01
COL18A1-201ENST00000342220 CRACR2BQ8N4Y2 399 aaPredicted RBP15.11■□□□□ 0.01
COL18A1-201ENST00000342220 PFKFB2O60825 505 aa15.11■□□□□ 0.01
COL18A1-201ENST00000342220 CTDNEP1O95476 244 aa15.11■□□□□ 0.01
COL18A1-201ENST00000342220 SP8Q8IXZ3 490 aa15.11■□□□□ 0.01
COL18A1-201ENST00000342220 CRAMP1Q96RY5 1269 aa15.11■□□□□ 0.01
COL18A1-201ENST00000342220 AP5Z1O43299 807 aa15.1■□□□□ 0.01
COL18A1-201ENST00000342220 CKAP2LQ8IYA6 745 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms