RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 AGBL3Q8NEM8 1001 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 ACSF2Q96CM8 615 aaPredicted RBP9.59□□□□□ -0.87
HMGB1-203ENST00000341423 TSG101Q99816 390 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 AATFQ9NY61 560 aaKnown RBP eCLIP9.59□□□□□ -0.87
HMGB1-203ENST00000341423 DOLKQ9UPQ8 538 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 GOLGA8AA7E2F4 631 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 GOLGA8BA8MQT2 603 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 GBP2P32456 591 aaPredicted RBP9.59□□□□□ -0.87
HMGB1-203ENST00000341423 VEPH1Q14D04 833 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 CCDC26Q8TAB7 109 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 PUS7Q96PZ0 661 aaKnown RBP9.59□□□□□ -0.87
HMGB1-203ENST00000341423 KIF2CQ99661 725 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 A0A1W2PP64 1363 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 BTDP43251 543 aa9.59□□□□□ -0.88
HMGB1-203ENST00000341423 TFDP1Q14186 410 aa9.59□□□□□ -0.88
HMGB1-203ENST00000341423 TTLL4Q14679 1199 aa9.59□□□□□ -0.88
HMGB1-203ENST00000341423 WTAPQ15007 396 aa9.59□□□□□ -0.88
HMGB1-203ENST00000341423 GSDMBQ8TAX9 411 aa9.59□□□□□ -0.88
HMGB1-203ENST00000341423 CRAMP1Q96RY5 1269 aa9.59□□□□□ -0.88
HMGB1-203ENST00000341423 SUGCTQ9HAC7 445 aa9.59□□□□□ -0.88
HMGB1-203ENST00000341423 ZNF449Q6P9G9 518 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 HS6ST3Q8IZP7 471 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 ZMYND8Q9ULU4 1186 aaPredicted RBP9.58□□□□□ -0.88
HMGB1-203ENST00000341423 WDR33Q9C0J8 1336 aaKnown RBP9.58□□□□□ -0.88
HMGB1-203ENST00000341423 NDUFV1P49821 464 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 E2F5Q15329 346 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 CCDC70Q6NSX1 233 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 SEPT14Q6ZU15 432 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 OTUD6AQ7L8S5 288 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 MARCH10Q8NA82 808 aaPredicted RBP9.58□□□□□ -0.88
HMGB1-203ENST00000341423 SLC7A5P2Q9GIP4 190 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 ENTPD7Q9NQZ7 604 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 NDUFB9Q9Y6M9 179 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 IDEP14735 1019 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 NFKBIAP25963 317 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 RASA3Q14644 834 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 STK38Q15208 465 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 SOCS4Q8WXH5 440 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 PPP2R3BQ9Y5P8 575 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 SAMD9Q5K651 1589 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 GOLGA8FQ08AF8 430 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 GOLGA8DPQ0D2H9 430 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 PTPAQ15257 358 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 FAM161BQ96MY7 647 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 POLR3EQ9NVU0 708 aa9.58□□□□□ -0.88
HMGB1-203ENST00000341423 GOLGA6L19H0YKK7 550 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 CTSWP56202 376 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 IRAK1BP1Q5VVH5 260 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 NACC1Q96RE7 527 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 PARP2Q9UGN5 583 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 CPA4Q9UI42 421 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 CCDC171Q6TFL3 1326 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 COL15A1P39059 1388 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 BCAR3O75815 825 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 PDCP20941 246 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 GRK4P32298 578 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 EPHA10Q5JZY3 1008 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 PRAMEF18Q5VWM3 479 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 BLOC1S2Q6QNY1 142 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 GIGYF2Q6Y7W6 1299 aaKnown RBP9.57□□□□□ -0.88
HMGB1-203ENST00000341423 ZC3H15Q8WU90 426 aaKnown RBP9.57□□□□□ -0.88
HMGB1-203ENST00000341423 EDC3Q96F86 508 aaKnown RBP9.57□□□□□ -0.88
HMGB1-203ENST00000341423 SLU7O95391 586 aaKnown RBP9.57□□□□□ -0.88
HMGB1-203ENST00000341423 FOSL2P15408 326 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 IL31Q6EBC2 164 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 RPAP2Q8IXW5 612 aaPredicted RBP9.57□□□□□ -0.88
HMGB1-203ENST00000341423 NSMCE1Q8WV22 266 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 TMEM169Q96HH4 297 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 IGFLR1Q9H665 355 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 CLIP2Q9UDT6 1046 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 PCDHB12Q9Y5F1 795 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 CHD1O14646 1710 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 NCOA3Q9Y6Q9 1424 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 PZPP20742 1482 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 KRT10P13645 584 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 BIRC3Q13489 604 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 RAB30Q15771 203 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 USH1GQ495M9 461 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 RNF219Q5W0B1 726 aaPredicted RBP9.57□□□□□ -0.88
HMGB1-203ENST00000341423 N4BP2L2Q92802 583 aaPredicted RBP9.57□□□□□ -0.88
HMGB1-203ENST00000341423 DEFB118Q96PH6 123 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 TRIM5Q9C035 493 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 IRF2BPLQ9H1B7 796 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 RTL1A6NKG5 1358 aa9.57□□□□□ -0.88
HMGB1-203ENST00000341423 KRT13P13646 458 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 MAP2K5Q13163 448 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 AEBP1Q8IUX7 1158 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 PEG3Q9GZU2 1588 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 SEPT8Q92599 483 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 APOL6Q9BWW8 343 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 FAM49AQ9H0Q0 323 aaPredicted RBP9.56□□□□□ -0.88
HMGB1-203ENST00000341423 SLC4A7Q9Y6M7 1214 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 SSH2Q76I76 1423 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 COL17A1Q9UMD9 1497 aaPredicted RBP9.56□□□□□ -0.88
HMGB1-203ENST00000341423 SOS2Q07890 1332 aaPredicted RBP9.56□□□□□ -0.88
HMGB1-203ENST00000341423 USP17L12C9JPN9 530 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 USP17L21D6R901 530 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 NNMTP40261 264 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 SWAP70Q9UH65 585 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 MTUS1Q9ULD2 1270 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 121 ms