RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 CDR1P51861 262 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 KARSQ15046 597 aaKnown RBP13.42□□□□□ -0.26
SHMT2-201ENST00000328923 PTPN21Q16825 1174 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 ACCSLQ4AC99 568 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 CAPRIN2Q6IMN6 1127 aaKnown RBP13.42□□□□□ -0.26
SHMT2-201ENST00000328923 MYLK4Q86YV6 388 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-201ENST00000328923 PARP9Q8IXQ6 854 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 USP44Q9H0E7 712 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 TMX4Q9H1E5 349 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-201ENST00000328923 TMEM165Q9HC07 324 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 HOMER3Q9NSC5 361 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 TRPM3Q9HCF6 1732 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-201ENST00000328923 EIF2S2P20042 333 aaKnown RBP13.42□□□□□ -0.26
SHMT2-201ENST00000328923 NECTIN1Q15223 517 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 ADCK5Q3MIX3 580 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 SPATA21Q7Z572 469 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 B4GALNT2Q8NHY0 566 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 GBP3Q9H0R5 595 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 HPCAL4Q9UM19 191 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 TBC1D2BQ9UPU7 963 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 SPG7Q9UQ90 795 aa13.42□□□□□ -0.26
SHMT2-201ENST00000328923 ZC3H4Q9UPT8 1303 aaKnown RBP13.42□□□□□ -0.26
SHMT2-201ENST00000328923 ADCY9O60503 1353 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 MYH15Q9Y2K3 1946 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 CDKL5O76039 1030 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 ATF3P18847 181 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 GGCXP38435 758 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 ARHGAP25P42331 645 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 RNF187Q5TA31 235 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-201ENST00000328923 B4GALNT4Q76KP1 1039 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 RSRC1Q96IZ7 334 aaKnown RBP13.41□□□□□ -0.26
SHMT2-201ENST00000328923 TSGA10Q9BZW7 698 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 TPX2Q9ULW0 747 aaKnown RBP13.41□□□□□ -0.26
SHMT2-201ENST00000328923 NDUFAB1O14561 156 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 SETSIPP0DME0 302 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 CDC25CP30307 473 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 PPFIA1Q13136 1202 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 PRPF40BQ6NWY9 871 aaKnown RBP13.41□□□□□ -0.26
SHMT2-201ENST00000328923 KCNH5Q8NCM2 988 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 LTV1Q96GA3 475 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-201ENST00000328923 FMNL2Q96PY5 1086 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 MAF1Q9H063 256 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 SNRKQ9NRH2 765 aa13.41□□□□□ -0.26
SHMT2-201ENST00000328923 PHRF1Q9P1Y6 1649 aaKnown RBP13.4□□□□□ -0.26
SHMT2-201ENST00000328923 GOLGA6CA6NDK9 693 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 SURF6O75683 361 aaKnown RBP13.4□□□□□ -0.26
SHMT2-201ENST00000328923 GOLGA6DP0CG33 693 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 IMPDH2P12268 514 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 TOGARAM2Q6ZUX3 1019 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 IP6K1Q92551 441 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 VIPAS39Q9H9C1 493 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 GOLGA6AQ9NYA3 693 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 SPDYE3A6NKU9 549 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 MAP4K4O95819 1239 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-201ENST00000328923 OATP04181 439 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 PDIA5Q14554 519 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 KIF4BQ2VIQ3 1234 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 FILIP1LQ4L180 1135 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 MIS18BP1Q6P0N0 1132 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 CYB5D1Q6P9G0 228 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 FCHSD1Q86WN1 690 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 NUP133Q8WUM0 1156 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 GDAP1L1Q96MZ0 367 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 PLEKHG4BQ96PX9 1271 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 EPAS1Q99814 870 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 RMI1Q9H9A7 625 aa13.4□□□□□ -0.26
SHMT2-201ENST00000328923 ZSCAN9O15535 394 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-201ENST00000328923 CSB-PGBD3P0DP91 1061 aa13.39□□□□□ -0.27
SHMT2-201ENST00000328923 PTH1RQ03431 593 aa13.39□□□□□ -0.27
SHMT2-201ENST00000328923 BZW1Q7L1Q6 419 aaKnown RBP13.39□□□□□ -0.27
SHMT2-201ENST00000328923 PPP1R42Q7Z4L9 355 aa13.39□□□□□ -0.27
SHMT2-201ENST00000328923 SLAIN2Q9P270 581 aa13.39□□□□□ -0.27
SHMT2-201ENST00000328923 HIP1O00291 1037 aa13.39□□□□□ -0.27
SHMT2-201ENST00000328923 TMEM139Q8IV31 216 aa13.39□□□□□ -0.27
SHMT2-201ENST00000328923 ZCWPW1Q9H0M4 648 aa13.39□□□□□ -0.27
SHMT2-201ENST00000328923 GOLPH3LQ9H4A5 285 aa13.39□□□□□ -0.27
SHMT2-201ENST00000328923 BATF3Q9NR55 127 aa13.39□□□□□ -0.27
SHMT2-201ENST00000328923 BABAM1Q9NWV8 329 aa13.39□□□□□ -0.27
SHMT2-201ENST00000328923 PCDHGC5Q9Y5F6 944 aa13.39□□□□□ -0.27
SHMT2-201ENST00000328923 SF3B2Q13435 895 aaKnown RBP13.38□□□□□ -0.27
SHMT2-201ENST00000328923 MAGEC3Q8TD91 643 aa13.38□□□□□ -0.27
SHMT2-201ENST00000328923 MMTAG2Q9BU76 263 aaKnown RBP13.38□□□□□ -0.27
SHMT2-201ENST00000328923 CDC23Q9UJX2 597 aa13.38□□□□□ -0.27
SHMT2-201ENST00000328923 CFAP45Q9UL16 551 aa13.38□□□□□ -0.27
SHMT2-201ENST00000328923 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.38□□□□□ -0.27
SHMT2-201ENST00000328923 SLIT3O75094 1523 aa13.38□□□□□ -0.27
SHMT2-201ENST00000328923 TPP2P29144 1249 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-201ENST00000328923 STIM1Q13586 685 aa13.38□□□□□ -0.27
SHMT2-201ENST00000328923 AMOTQ4VCS5 1084 aa13.38□□□□□ -0.27
SHMT2-201ENST00000328923 CREB3L3Q68CJ9 461 aa13.38□□□□□ -0.27
SHMT2-201ENST00000328923 CWF19L1Q69YN2 538 aaKnown RBP13.38□□□□□ -0.27
SHMT2-201ENST00000328923 SLC30A9Q6PML9 568 aa13.38□□□□□ -0.27
SHMT2-201ENST00000328923 TCP11Q8WWU5 503 aa13.38□□□□□ -0.27
SHMT2-201ENST00000328923 ZNF396Q96N95 335 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-201ENST00000328923 DESI2Q9BSY9 194 aa13.38□□□□□ -0.27
SHMT2-201ENST00000328923 AGPSO00116 658 aa13.37□□□□□ -0.27
SHMT2-201ENST00000328923 ARHGAP6O43182 974 aa13.37□□□□□ -0.27
SHMT2-201ENST00000328923 SMNDC1O75940 238 aaKnown RBP eCLIP13.37□□□□□ -0.276e-6■□□□□ 8.8
SHMT2-201ENST00000328923 CEBPZQ03701 1054 aaKnown RBP13.37□□□□□ -0.27
SHMT2-201ENST00000328923 RESTQ13127 1097 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms