RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 MB21D2Q8IYB1 491 aaPredicted RBP11.82□□□□□ -0.52
HMGB3-201ENST00000325307 BRF1Q92994 677 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 VEZTQ9HBM0 779 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 DYNLL2Q96FJ2 89 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 TMX3Q96JJ7 454 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 MKNK2Q9HBH9 465 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 MYOZ2Q9NPC6 264 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 CNOT7Q9UIV1 285 aaKnown RBP11.82□□□□□ -0.52
HMGB3-201ENST00000325307 PLCD1P51178 756 aa11.81□□□□□ -0.52
HMGB3-201ENST00000325307 ESR2Q92731 530 aa11.81□□□□□ -0.52
HMGB3-201ENST00000325307 TACC3Q9Y6A5 838 aa11.81□□□□□ -0.52
HMGB3-201ENST00000325307 TCP10L2B9ZVM9 353 aa11.81□□□□□ -0.52
HMGB3-201ENST00000325307 EXOSC10Q01780 885 aaKnown RBP11.81□□□□□ -0.52
HMGB3-201ENST00000325307 TTC6Q86TZ1 520 aa11.81□□□□□ -0.52
HMGB3-201ENST00000325307 OSBPL5Q9H0X9 879 aaPredicted RBP11.81□□□□□ -0.52
HMGB3-201ENST00000325307 PSME4Q14997 1843 aa11.81□□□□□ -0.52
HMGB3-201ENST00000325307 GRIN3BO60391 1043 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 HLA-DOAP06340 250 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 CYB5R4Q7L1T6 521 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 DPF2Q92785 391 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 H7C1D1 291 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 TOB2Q14106 344 aaPredicted RBP11.8□□□□□ -0.52
HMGB3-201ENST00000325307 SART3Q15020 963 aaKnown RBP11.8□□□□□ -0.52
HMGB3-201ENST00000325307 TBC1D10BQ4KMP7 808 aaPredicted RBP11.8□□□□□ -0.52
HMGB3-201ENST00000325307 ZKSCAN3Q9BRR0 538 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 UBAC1Q9BSL1 405 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 ZSWIM5Q9P217 1185 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 ZNF646O15015 1829 aaPredicted RBP11.8□□□□□ -0.52
HMGB3-201ENST00000325307 ERICH2A1L162 156 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 IFIT3O14879 490 aaKnown RBP11.8□□□□□ -0.52
HMGB3-201ENST00000325307 PCP11498 1178 aaKnown RBP11.8□□□□□ -0.52
HMGB3-201ENST00000325307 STK3Q13188 491 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 SAMD7Q7Z3H4 446 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 GPC2Q8N158 579 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 SLC44A5Q8NCS7 719 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 ZNF287Q9HBT7 754 aa11.8□□□□□ -0.52
HMGB3-201ENST00000325307 GPHNQ9NQX3 736 aaPredicted RBP11.8□□□□□ -0.52
HMGB3-201ENST00000325307 ZNF70Q9UC06 446 aaPredicted RBP11.8□□□□□ -0.52
HMGB3-201ENST00000325307 ANTXR2P58335 489 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 APOBRQ0VD83 1088 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 NBPF9Q3BBW0 867 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 TMEM67Q5HYA8 995 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 NFXL1Q6ZNB6 911 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 IDI2Q9BXS1 227 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 TRIM34Q9BYJ4 488 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 TSPY2A6NKD2 308 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 WNT10BO00744 389 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 DDNO94850 711 aaPredicted RBP11.79□□□□□ -0.52
HMGB3-201ENST00000325307 FAM47AQ5JRC9 791 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 ZFPM1Q8IX07 1006 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 ZNF444Q8N0Y2 327 aaPredicted RBP11.79□□□□□ -0.52
HMGB3-201ENST00000325307 CRACR2BQ8N4Y2 399 aaPredicted RBP11.79□□□□□ -0.52
HMGB3-201ENST00000325307 NKX2-3Q8TAU0 364 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 ZSCAN31Q96LW9 406 aaPredicted RBP11.79□□□□□ -0.52
HMGB3-201ENST00000325307 FAM198AQ9UFP1 575 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 TPCN1Q9ULQ1 816 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 LAMA4Q16363 1823 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 ZNF280AP59817 542 aaPredicted RBP11.79□□□□□ -0.52
HMGB3-201ENST00000325307 ALDH8A1Q9H2A2 487 aaPredicted RBP11.79□□□□□ -0.52
HMGB3-201ENST00000325307 NAV1Q8NEY1 1877 aa11.79□□□□□ -0.52
HMGB3-201ENST00000325307 MMP14P50281 582 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 IQCA1Q86XH1 822 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 SH2B1Q9NRF2 756 aaPredicted RBP11.78□□□□□ -0.52
HMGB3-201ENST00000325307 ORC4O43929 436 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 LARGE1O95461 756 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 EGFRP00533 1210 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 LMOD1P29536 600 aaPredicted RBP11.78□□□□□ -0.52
HMGB3-201ENST00000325307 KIF4BQ2VIQ3 1234 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 SPDYE2Q495Y8 402 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 NECAB1Q8N987 351 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 MTMR14Q8NCE2 650 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 DHX36Q9H2U1 1008 aaKnown RBP11.78□□□□□ -0.52
HMGB3-201ENST00000325307 SERPINB13Q9UIV8 391 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 ANGEL1Q9UNK9 670 aaKnown RBP11.78□□□□□ -0.52
HMGB3-201ENST00000325307 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.78□□□□□ -0.52
HMGB3-201ENST00000325307 CDK8P49336 464 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 ME3Q16798 604 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 DPY19L2Q6NUT2 758 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 CCDC83Q8IWF9 413 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 TMEM87BQ96K49 555 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 GPRC5DQ9NZD1 345 aa11.78□□□□□ -0.52
HMGB3-201ENST00000325307 WDR19Q8NEZ3 1342 aa11.77□□□□□ -0.52
HMGB3-201ENST00000325307 TSPY3P0CV98 308 aa11.77□□□□□ -0.52
HMGB3-201ENST00000325307 TSPY8P0CW00 308 aa11.77□□□□□ -0.52
HMGB3-201ENST00000325307 TIAM2Q8IVF5 1701 aa11.77□□□□□ -0.53
HMGB3-201ENST00000325307 KLF18A0A0U1RQI7 1052 aa11.77□□□□□ -0.53
HMGB3-201ENST00000325307 DDTLA6NHG4 134 aaPredicted RBP11.77□□□□□ -0.53
HMGB3-201ENST00000325307 ENTPD3O75355 529 aa11.77□□□□□ -0.53
HMGB3-201ENST00000325307 TFAP4Q01664 338 aa11.77□□□□□ -0.53
HMGB3-201ENST00000325307 WTAPQ15007 396 aa11.77□□□□□ -0.53
HMGB3-201ENST00000325307 C16orf86Q6ZW13 317 aa11.77□□□□□ -0.53
HMGB3-201ENST00000325307 SCAF8Q9UPN6 1271 aaKnown RBP11.77□□□□□ -0.53
HMGB3-201ENST00000325307 CCDC69A6NI79 296 aa11.77□□□□□ -0.53
HMGB3-201ENST00000325307 SH2B2O14492 632 aaPredicted RBP11.77□□□□□ -0.53
HMGB3-201ENST00000325307 EPS15P42566 896 aa11.77□□□□□ -0.53
HMGB3-201ENST00000325307 RAB11FIP4Q86YS3 637 aa11.77□□□□□ -0.53
HMGB3-201ENST00000325307 CSRNP1Q96S65 589 aa11.77□□□□□ -0.53
HMGB3-201ENST00000325307 CHMP5Q9NZZ3 219 aa11.77□□□□□ -0.53
HMGB3-201ENST00000325307 PI4KBQ9UBF8 816 aa11.77□□□□□ -0.53
HMGB3-201ENST00000325307 ROBO3Q96MS0 1386 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms