RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 PTPRAP18433 802 aa19.83■□□□□ 0.77
LSM1-201ENST00000311351 TTF1Q15361 905 aaPredicted RBP19.83■□□□□ 0.77
LSM1-201ENST00000311351 SLC4A8Q2Y0W8 1093 aa19.83■□□□□ 0.77
LSM1-201ENST00000311351 CRBNQ96SW2 442 aa19.83■□□□□ 0.77
LSM1-201ENST00000311351 BOLA2Q9H3K6 86 aa19.83■□□□□ 0.77
LSM1-201ENST00000311351 SAP30BPQ9UHR5 308 aaKnown RBP19.83■□□□□ 0.77
LSM1-201ENST00000311351 CTNND1O60716 968 aaKnown RBP19.82■□□□□ 0.76
LSM1-201ENST00000311351 PDE6AP16499 860 aa19.82■□□□□ 0.76
LSM1-201ENST00000311351 MOGSQ13724 837 aa19.82■□□□□ 0.76
LSM1-201ENST00000311351 RRP1BQ14684 758 aaKnown RBP19.82■□□□□ 0.76
LSM1-201ENST00000311351 CD99L2Q8TCZ2 262 aa19.82■□□□□ 0.76
LSM1-201ENST00000311351 ZFYVE28Q9HCC9 887 aa19.82■□□□□ 0.76
LSM1-201ENST00000311351 ZHX2Q9Y6X8 837 aa19.82■□□□□ 0.76
LSM1-201ENST00000311351 ATP5JP18859 108 aa19.81■□□□□ 0.76
LSM1-201ENST00000311351 CAP1Q01518 475 aa19.81■□□□□ 0.76
LSM1-201ENST00000311351 DCTPP1Q9H773 170 aa19.81■□□□□ 0.76
LSM1-201ENST00000311351 DNAJC18Q9H819 358 aa19.81■□□□□ 0.76
LSM1-201ENST00000311351 PALD1Q9ULE6 856 aa19.81■□□□□ 0.76
LSM1-201ENST00000311351 HTTP42858 3142 aa19.8■□□□□ 0.76
LSM1-201ENST00000311351 SLC9C2Q5TAH2 1124 aa19.8■□□□□ 0.76
LSM1-201ENST00000311351 RIOK1Q9BRS2 568 aaKnown RBP19.8■□□□□ 0.76
LSM1-201ENST00000311351 DHX36Q9H2U1 1008 aaKnown RBP19.8■□□□□ 0.76
LSM1-201ENST00000311351 ZCCHC17Q9NP64 241 aaKnown RBP19.8■□□□□ 0.76
LSM1-201ENST00000311351 PAG1Q9NWQ8 432 aa19.8■□□□□ 0.76
LSM1-201ENST00000311351 PI4KBQ9UBF8 816 aa19.8■□□□□ 0.76
LSM1-201ENST00000311351 HPS5Q9UPZ3 1129 aa19.8■□□□□ 0.76
LSM1-201ENST00000311351 TRIM17Q9Y577 477 aa19.8■□□□□ 0.76
LSM1-201ENST00000311351 ZNF532Q9HCE3 1301 aa19.79■□□□□ 0.76
LSM1-201ENST00000311351 TRIM75PA6NK02 468 aa19.79■□□□□ 0.76
LSM1-201ENST00000311351 CXCL11O14625 94 aa19.79■□□□□ 0.76
LSM1-201ENST00000311351 USP5P45974 858 aa19.79■□□□□ 0.76
LSM1-201ENST00000311351 SP3Q02447 781 aa19.79■□□□□ 0.76
LSM1-201ENST00000311351 OTOP1Q7RTM1 612 aa19.79■□□□□ 0.76
LSM1-201ENST00000311351 ANKRD23Q86SG2 305 aa19.79■□□□□ 0.76
LSM1-201ENST00000311351 ERO1AQ96HE7 468 aa19.79■□□□□ 0.76
LSM1-201ENST00000311351 HERC5Q9UII4 1024 aaKnown RBP19.79■□□□□ 0.76
LSM1-201ENST00000311351 AFG3L2Q9Y4W6 797 aa19.79■□□□□ 0.76
LSM1-201ENST00000311351 LOC285556D6RIA3 1793 aa19.79■□□□□ 0.76
LSM1-201ENST00000311351 A0A0G2JLL6 359 aaPredicted RBP19.78■□□□□ 0.76
LSM1-201ENST00000311351 TCRBV5S4A2TA0A5A2 114 aa19.78■□□□□ 0.76
LSM1-201ENST00000311351 PDHXO00330 501 aa19.78■□□□□ 0.76
LSM1-201ENST00000311351 PKN2Q16513 984 aaKnown RBP19.78■□□□□ 0.76
LSM1-201ENST00000311351 SLFNL1Q499Z3 407 aa19.78■□□□□ 0.76
LSM1-201ENST00000311351 TSHZ3Q63HK5 1081 aa19.78■□□□□ 0.76
LSM1-201ENST00000311351 GPAT2Q6NUI2 795 aa19.78■□□□□ 0.76
LSM1-201ENST00000311351 PRRT2Q7Z6L0 340 aaPredicted RBP19.78■□□□□ 0.76
LSM1-201ENST00000311351 HAUS7Q99871 368 aa19.78■□□□□ 0.76
LSM1-201ENST00000311351 MAGEB6P1A0A0J9YX57 407 aa19.77■□□□□ 0.76
LSM1-201ENST00000311351 TLR2O60603 784 aa19.77■□□□□ 0.76
LSM1-201ENST00000311351 CHGBP05060 677 aa19.77■□□□□ 0.76
LSM1-201ENST00000311351 CAP2P40123 477 aa19.77■□□□□ 0.76
LSM1-201ENST00000311351 SHROOM1Q2M3G4 852 aaPredicted RBP19.77■□□□□ 0.76
LSM1-201ENST00000311351 FBXO46Q6PJ61 603 aaPredicted RBP19.77■□□□□ 0.76
LSM1-201ENST00000311351 TMED8Q6PL24 325 aaPredicted RBP19.77■□□□□ 0.76
LSM1-201ENST00000311351 GADL1Q6ZQY3 521 aa19.77■□□□□ 0.76
LSM1-201ENST00000311351 CERS3Q8IU89 383 aa19.77■□□□□ 0.76
LSM1-201ENST00000311351 CRACR2BQ8N4Y2 399 aaPredicted RBP19.77■□□□□ 0.76
LSM1-201ENST00000311351 ADGRA2Q96PE1 1338 aa19.76■□□□□ 0.75
LSM1-201ENST00000311351 HLA-DOAP06340 250 aa19.76■□□□□ 0.75
LSM1-201ENST00000311351 JAG1P78504 1218 aa19.76■□□□□ 0.75
LSM1-201ENST00000311351 LCORLQ8N3X6 602 aa19.76■□□□□ 0.75
LSM1-201ENST00000311351 ECHDC1Q9NTX5 307 aa19.76■□□□□ 0.75
LSM1-201ENST00000311351 BAZ2AQ9UIF9 1905 aaKnown RBP19.76■□□□□ 0.75
LSM1-201ENST00000311351 ECM2O94769 699 aaPredicted RBP19.75■□□□□ 0.75
LSM1-201ENST00000311351 GDF11O95390 407 aa19.75■□□□□ 0.75
LSM1-201ENST00000311351 ADD2P35612 726 aa19.75■□□□□ 0.75
LSM1-201ENST00000311351 METTL16Q86W50 562 aaKnown RBP19.75■□□□□ 0.75
LSM1-201ENST00000311351 TRIM34Q9BYJ4 488 aa19.75■□□□□ 0.75
LSM1-201ENST00000311351 CPA4Q9UI42 421 aa19.75■□□□□ 0.75
LSM1-201ENST00000311351 CYP2C8P10632 490 aa19.74■□□□□ 0.75
LSM1-201ENST00000311351 SOX10P56693 466 aa19.74■□□□□ 0.75
LSM1-201ENST00000311351 FOXP4Q8IVH2 680 aaPredicted RBP19.74■□□□□ 0.75
LSM1-201ENST00000311351 ARHGAP39Q9C0H5 1083 aa19.74■□□□□ 0.75
LSM1-201ENST00000311351 ARMT1Q9H993 441 aa19.74■□□□□ 0.75
LSM1-201ENST00000311351 EFCC1Q9HA90 598 aa19.74■□□□□ 0.75
LSM1-201ENST00000311351 EVX2Q03828 476 aa19.73■□□□□ 0.75
LSM1-201ENST00000311351 SPP2Q13103 211 aa19.73■□□□□ 0.75
LSM1-201ENST00000311351 C17orf99Q6UX52 265 aa19.73■□□□□ 0.75
LSM1-201ENST00000311351 FASTKD5Q7L8L6 764 aaKnown RBP19.73■□□□□ 0.75
LSM1-201ENST00000311351 OTUD7AQ8TE49 926 aaPredicted RBP19.73■□□□□ 0.75
LSM1-201ENST00000311351 SDR42E1Q8WUS8 393 aa19.73■□□□□ 0.75
LSM1-201ENST00000311351 PARK7Q99497 189 aaKnown RBP19.73■□□□□ 0.75
LSM1-201ENST00000311351 CRNKL1Q9BZJ0 848 aaKnown RBP19.73■□□□□ 0.75
LSM1-201ENST00000311351 USP17L5A8MUK1 530 aa19.72■□□□□ 0.75
LSM1-201ENST00000311351 MGAMO43451 1857 aa19.72■□□□□ 0.75
LSM1-201ENST00000311351 MBD4O95243 580 aa19.72■□□□□ 0.75
LSM1-201ENST00000311351 LACTBP83111 547 aaPredicted RBP19.72■□□□□ 0.75
LSM1-201ENST00000311351 TREML2Q5T2D2 321 aa19.72■□□□□ 0.75
LSM1-201ENST00000311351 ZNF280CQ8ND82 737 aa19.72■□□□□ 0.75
LSM1-201ENST00000311351 GPATCH3Q96I76 525 aa19.72■□□□□ 0.75
LSM1-201ENST00000311351 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.72■□□□□ 0.75
LSM1-201ENST00000311351 ZBTB21Q9ULJ3 1066 aa19.72■□□□□ 0.75
LSM1-201ENST00000311351 MYH8P13535 1937 aa19.72■□□□□ 0.75
LSM1-201ENST00000311351 ASNSP08243 561 aa19.71■□□□□ 0.75
LSM1-201ENST00000311351 PLCD1P51178 756 aa19.71■□□□□ 0.75
LSM1-201ENST00000311351 HMGCS2P54868 508 aa19.71■□□□□ 0.75
LSM1-201ENST00000311351 EHD4Q9H223 541 aa19.71■□□□□ 0.75
LSM1-201ENST00000311351 SERPINB13Q9UIV8 391 aa19.71■□□□□ 0.75
LSM1-201ENST00000311351 PTPN22Q9Y2R2 807 aa19.71■□□□□ 0.75
LSM1-201ENST00000311351 PRKAB2O43741 272 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms