RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 TRIM27P14373 513 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 ATP11AP98196 1134 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 BRDTQ58F21 947 aaPredicted RBP9.23□□□□□ -0.93
VPS41-202ENST00000310301 VTI1AQ96AJ9 217 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 CALML4Q96GE6 196 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 BRIP1Q9BX63 1249 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 AXIN2Q9Y2T1 843 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 CDK12Q9NYV4 1490 aaPredicted RBP9.23□□□□□ -0.93
VPS41-202ENST00000310301 PCK1P35558 622 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 DNM1Q05193 864 aaKnown RBP9.23□□□□□ -0.93
VPS41-202ENST00000310301 PPP2R3AQ06190 1150 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 PICALMQ13492 652 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 POTEDQ86YR6 584 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 CCDC24Q8N4L8 307 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 TMEM87AQ8NBN3 555 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 JARID2Q92833 1246 aaPredicted RBP9.23□□□□□ -0.93
VPS41-202ENST00000310301 SNX21Q969T3 373 aa9.23□□□□□ -0.93
VPS41-202ENST00000310301 PYM1Q9BRP8 204 aaKnown RBP9.23□□□□□ -0.93
VPS41-202ENST00000310301 KRT13P13646 458 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 CETN1Q12798 172 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 LMNTD2Q8IXW0 634 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 ZBTB38Q8NAP3 1195 aaPredicted RBP9.22□□□□□ -0.93
VPS41-202ENST00000310301 EVI5LQ96CN4 794 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 GUCA1BQ9UMX6 200 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 PLSCR1O15162 318 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 IARSP41252 1262 aaKnown RBP9.22□□□□□ -0.93
VPS41-202ENST00000310301 AFMP43652 599 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 SETDB1Q15047 1291 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 C8orf34Q49A92 452 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 TEKT1Q969V4 418 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 CYP27B1O15528 508 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 F13A1P00488 732 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 GNAT2P19087 354 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 IL17REQ8NFR9 667 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 MYRIPQ8NFW9 859 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 MRPS27Q92552 414 aaKnown RBP9.22□□□□□ -0.93
VPS41-202ENST00000310301 NEK1Q96PY6 1258 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 ATG3Q9NT62 314 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 TCP11L1Q9NUJ3 509 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 RMND1Q9NWS8 449 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 KRT83P78385 493 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 TSHZ3Q63HK5 1081 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 RAB11FIP4Q86YS3 637 aa9.22□□□□□ -0.93
VPS41-202ENST00000310301 SEC62Q99442 399 aaKnown RBP9.22□□□□□ -0.93
VPS41-202ENST00000310301 KRT86O43790 486 aa9.21□□□□□ -0.93
VPS41-202ENST00000310301 SREK1Q8WXA9 508 aaKnown RBP9.21□□□□□ -0.93
VPS41-202ENST00000310301 ARHGEF1Q92888 912 aaKnown RBP9.21□□□□□ -0.93
VPS41-202ENST00000310301 ECHDC1Q9NTX5 307 aa9.21□□□□□ -0.93
VPS41-202ENST00000310301 MYO3BQ8WXR4 1341 aa9.21□□□□□ -0.93
VPS41-202ENST00000310301 TLDC2A0PJX2 215 aa9.21□□□□□ -0.93
VPS41-202ENST00000310301 RANBP6O60518 1105 aaKnown RBP9.21□□□□□ -0.93
VPS41-202ENST00000310301 KCNQ4P56696 695 aa9.21□□□□□ -0.93
VPS41-202ENST00000310301 CFAP58Q5T655 872 aa9.21□□□□□ -0.93
VPS41-202ENST00000310301 C8orf58Q8NAV2 365 aa9.21□□□□□ -0.93
VPS41-202ENST00000310301 KCNK9Q9NPC2 374 aa9.21□□□□□ -0.93
VPS41-202ENST00000310301 ANAPC4Q9UJX5 808 aa9.21□□□□□ -0.93
VPS41-202ENST00000310301 COMMD10Q9Y6G5 202 aa9.21□□□□□ -0.93
VPS41-202ENST00000310301 MAP2K2P36507 400 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 VAV2P52735 878 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 KIF5AQ12840 1032 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 STMN2Q93045 179 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 FERMT2Q96AC1 680 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 EXOC1Q9NV70 894 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 IFNKQ9P0W0 207 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 EYA2O00167 538 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 KIF3CO14782 793 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 SWAP70Q9UH65 585 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 NDUFAB1O14561 156 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 TUBBP07437 444 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 SETSIPP0DME0 302 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 TGFB2P61812 414 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 NUCB1Q02818 461 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 KCNG4Q8TDN1 519 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 PPP1R12CQ9BZL4 782 aa9.21□□□□□ -0.94
VPS41-202ENST00000310301 COL15A1P39059 1388 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 ACTN2P35609 894 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 UBA7P41226 1012 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 TERF1P54274 439 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 CTSWP56202 376 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 SMCR8Q8TEV9 937 aaPredicted RBP9.2□□□□□ -0.94
VPS41-202ENST00000310301 LPIN2Q92539 896 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 PLVAPQ9BX97 442 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 RBSNQ9H1K0 784 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 LUC7L2Q9Y383 392 aaKnown RBP9.2□□□□□ -0.94
VPS41-202ENST00000310301 TRPM1Q7Z4N2 1603 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 C21orf2O43822 256 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 YY1P25490 414 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 CCDC50Q8IVM0 306 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 MMRN2Q9H8L6 949 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 SRP68Q9UHB9 627 aaKnown RBP9.2□□□□□ -0.94
VPS41-202ENST00000310301 IQSEC3Q9UPP2 1182 aaPredicted RBP9.2□□□□□ -0.94
VPS41-202ENST00000310301 TSPY2A6NKD2 308 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 METAP2P50579 478 aaKnown RBP eCLIP9.2□□□□□ -0.94
VPS41-202ENST00000310301 ELF2Q15723 593 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 INTS8Q75QN2 995 aaKnown RBP9.2□□□□□ -0.94
VPS41-202ENST00000310301 TEX11Q8IYF3 940 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 HELBQ8NG08 1087 aaPredicted RBP9.2□□□□□ -0.94
VPS41-202ENST00000310301 UBLCP1Q8WVY7 318 aaPredicted RBP9.2□□□□□ -0.94
VPS41-202ENST00000310301 SLC26A6Q9BXS9 759 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 TRIM7Q9C029 511 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms