RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 IFIT3O14879 490 aaKnown RBP13.91□□□□□ -0.18
TRIM40-205ENST00000307859 BAG3O95817 575 aa13.91□□□□□ -0.18
TRIM40-205ENST00000307859 MBD3O95983 291 aa13.91□□□□□ -0.18
TRIM40-205ENST00000307859 FDPSP14324 419 aaKnown RBP13.91□□□□□ -0.18
TRIM40-205ENST00000307859 SART3Q15020 963 aaKnown RBP13.91□□□□□ -0.18
TRIM40-205ENST00000307859 DIXDC1Q155Q3 683 aa13.91□□□□□ -0.18
TRIM40-205ENST00000307859 RRP12Q5JTH9 1297 aaKnown RBP13.91□□□□□ -0.18
TRIM40-205ENST00000307859 OLFM4Q6UX06 510 aa13.91□□□□□ -0.18
TRIM40-205ENST00000307859 ESR2Q92731 530 aa13.91□□□□□ -0.18
TRIM40-205ENST00000307859 ZNF622Q969S3 477 aaKnown RBP eCLIP13.91□□□□□ -0.18
TRIM40-205ENST00000307859 FAM163AQ96GL9 167 aaPredicted RBP13.91□□□□□ -0.18
TRIM40-205ENST00000307859 GZF1Q9H116 711 aaPredicted RBP13.91□□□□□ -0.18
TRIM40-205ENST00000307859 CNPY2Q9Y2B0 182 aa13.91□□□□□ -0.18
TRIM40-205ENST00000307859 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.91□□□□□ -0.18
TRIM40-205ENST00000307859 GAKO14976 1311 aa13.91□□□□□ -0.18
TRIM40-205ENST00000307859 ROBO3Q96MS0 1386 aa13.9□□□□□ -0.18
TRIM40-205ENST00000307859 CYP2D7A0A087X1C5 515 aa13.9□□□□□ -0.18
TRIM40-205ENST00000307859 SMIM22K7EJ46 135 aa13.9□□□□□ -0.18
TRIM40-205ENST00000307859 ORC4O43929 436 aa13.9□□□□□ -0.18
TRIM40-205ENST00000307859 RCAN1P53805 252 aa13.9□□□□□ -0.18
TRIM40-205ENST00000307859 RESTQ13127 1097 aa13.9□□□□□ -0.18
TRIM40-205ENST00000307859 FOXD4L6Q3SYB3 417 aaPredicted RBP13.9□□□□□ -0.18
TRIM40-205ENST00000307859 MFSD14BQ5SR56 506 aa13.9□□□□□ -0.18
TRIM40-205ENST00000307859 FOXD4L3Q6VB84 417 aaPredicted RBP13.9□□□□□ -0.18
TRIM40-205ENST00000307859 USP48Q86UV5 1035 aa13.9□□□□□ -0.18
TRIM40-205ENST00000307859 RGS22Q8NE09 1264 aa13.9□□□□□ -0.18
TRIM40-205ENST00000307859 ZC3H12CQ9C0D7 883 aaKnown RBP13.9□□□□□ -0.18
TRIM40-205ENST00000307859 TMX4Q9H1E5 349 aaPredicted RBP13.9□□□□□ -0.18
TRIM40-205ENST00000307859 TOMM22Q9NS69 142 aa13.9□□□□□ -0.18
TRIM40-205ENST00000307859 SUGT1Q9Y2Z0 365 aa13.9□□□□□ -0.18
TRIM40-205ENST00000307859 GPR75-ASB3A0A0A6YYF3 556 aa13.9□□□□□ -0.19
TRIM40-205ENST00000307859 H3BQV1 296 aa13.9□□□□□ -0.19
TRIM40-205ENST00000307859 RIMBP2O15034 1052 aa13.9□□□□□ -0.19
TRIM40-205ENST00000307859 ZBTB43O43298 467 aa13.9□□□□□ -0.19
TRIM40-205ENST00000307859 METAP2P50579 478 aaKnown RBP eCLIP13.9□□□□□ -0.19
TRIM40-205ENST00000307859 DNM1Q05193 864 aaKnown RBP13.9□□□□□ -0.19
TRIM40-205ENST00000307859 WTAPQ15007 396 aa13.9□□□□□ -0.19
TRIM40-205ENST00000307859 SEC23AQ15436 765 aa13.9□□□□□ -0.19
TRIM40-205ENST00000307859 SLF2Q8IX21 1173 aa13.9□□□□□ -0.19
TRIM40-205ENST00000307859 TMTC2Q8N394 836 aa13.9□□□□□ -0.19
TRIM40-205ENST00000307859 SH3RF3Q8TEJ3 882 aaPredicted RBP13.9□□□□□ -0.19
TRIM40-205ENST00000307859 CNKSR1Q969H4 720 aa13.9□□□□□ -0.19
TRIM40-205ENST00000307859 EYA3Q99504 573 aa13.9□□□□□ -0.19
TRIM40-205ENST00000307859 NOL10Q9BSC4 688 aaKnown RBP13.9□□□□□ -0.19
TRIM40-205ENST00000307859 GDPD2Q9HCC8 539 aa13.9□□□□□ -0.19
TRIM40-205ENST00000307859 PCNTO95613 3336 aa13.89□□□□□ -0.19
TRIM40-205ENST00000307859 CNTNAP1P78357 1384 aa13.89□□□□□ -0.19
TRIM40-205ENST00000307859 FSD2A1L4K1 749 aa13.89□□□□□ -0.19
TRIM40-205ENST00000307859 CPLX1O14810 134 aa13.89□□□□□ -0.19
TRIM40-205ENST00000307859 NT5C2P49902 561 aa13.89□□□□□ -0.19
TRIM40-205ENST00000307859 GTF2IP78347 998 aa13.89□□□□□ -0.19
TRIM40-205ENST00000307859 CSPP1Q1MSJ5 1256 aa13.89□□□□□ -0.19
TRIM40-205ENST00000307859 NFXL1Q6ZNB6 911 aa13.89□□□□□ -0.19
TRIM40-205ENST00000307859 FERMT3Q86UX7 667 aa13.89□□□□□ -0.19
TRIM40-205ENST00000307859 RAB11FIP4Q86YS3 637 aa13.89□□□□□ -0.19
TRIM40-205ENST00000307859 ZSCAN16Q9H4T2 348 aaPredicted RBP13.89□□□□□ -0.19
TRIM40-205ENST00000307859 SLC12A7Q9Y666 1083 aa13.89□□□□□ -0.19
TRIM40-205ENST00000307859 ERICH2A1L162 156 aa13.88□□□□□ -0.19
TRIM40-205ENST00000307859 CCDC69A6NI79 296 aa13.88□□□□□ -0.19
TRIM40-205ENST00000307859 CDKL5O76039 1030 aa13.88□□□□□ -0.19
TRIM40-205ENST00000307859 SLC3A2P08195 630 aaKnown RBP13.88□□□□□ -0.19
TRIM40-205ENST00000307859 PLCG2P16885 1265 aa13.88□□□□□ -0.19
TRIM40-205ENST00000307859 CHRNA5P30532 468 aa13.88□□□□□ -0.19
TRIM40-205ENST00000307859 BTDP43251 543 aa13.88□□□□□ -0.19
TRIM40-205ENST00000307859 KRT85P78386 507 aa13.88□□□□□ -0.19
TRIM40-205ENST00000307859 MICU3Q86XE3 530 aa13.88□□□□□ -0.19
TRIM40-205ENST00000307859 STK11IPQ8N1F8 1099 aa13.88□□□□□ -0.19
TRIM40-205ENST00000307859 C7orf43Q8WVR3 580 aa13.88□□□□□ -0.19
TRIM40-205ENST00000307859 UBAC1Q9BSL1 405 aa13.88□□□□□ -0.19
TRIM40-205ENST00000307859 FAM217BQ9NTX9 383 aaPredicted RBP13.88□□□□□ -0.19
TRIM40-205ENST00000307859 ORC3Q9UBD5 711 aaPredicted RBP13.88□□□□□ -0.19
TRIM40-205ENST00000307859 ISY1Q9ULR0 285 aaKnown RBP13.88□□□□□ -0.19
TRIM40-205ENST00000307859 SBF1O95248 1867 aa13.88□□□□□ -0.19
TRIM40-205ENST00000307859 GOLGA8AA7E2F4 631 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 FIBPO43427 364 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 GADD45BO75293 160 aaPredicted RBP13.87□□□□□ -0.19
TRIM40-205ENST00000307859 CYP2D6P10635 497 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 LMNB1P20700 586 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 CDC27P30260 824 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 USP5P45974 858 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 EVX2Q03828 476 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 NTRK3Q16288 839 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 C12orf60Q5U649 245 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 CPLX2Q6PUV4 134 aaKnown RBP13.87□□□□□ -0.19
TRIM40-205ENST00000307859 ZKSCAN3Q9BRR0 538 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 MCM9Q9NXL9 1143 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 ELP1O95163 1332 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 TNKSO95271 1327 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 STK36Q9NRP7 1315 aa13.87□□□□□ -0.19
TRIM40-205ENST00000307859 USP17L8P0C7I0 530 aa13.86□□□□□ -0.19
TRIM40-205ENST00000307859 NCLP19338 710 aaKnown RBP13.86□□□□□ -0.19
TRIM40-205ENST00000307859 RXRAP19793 462 aa13.86□□□□□ -0.19
TRIM40-205ENST00000307859 ADD1P35611 737 aaKnown RBP13.86□□□□□ -0.19
TRIM40-205ENST00000307859 RHBDL3P58872 404 aa13.86□□□□□ -0.19
TRIM40-205ENST00000307859 UBE2HP62256 183 aa13.86□□□□□ -0.19
TRIM40-205ENST00000307859 CAVIN1Q6NZI2 390 aaKnown RBP13.86□□□□□ -0.19
TRIM40-205ENST00000307859 SYNE3Q6ZMZ3 975 aa13.86□□□□□ -0.19
TRIM40-205ENST00000307859 CERS5Q8N5B7 392 aa13.86□□□□□ -0.19
TRIM40-205ENST00000307859 ZSCAN10Q96SZ4 725 aaPredicted RBP13.86□□□□□ -0.19
TRIM40-205ENST00000307859 WBP1LQ9NX94 342 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms