RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 BTAF1O14981 1849 aa23.2■■□□□ 1.3
VPS53-201ENST00000291074 GLIPR1L2Q4G1C9 344 aa23.2■■□□□ 1.3
VPS53-201ENST00000291074 ISM2Q6H9L7 571 aa23.2■■□□□ 1.3
VPS53-201ENST00000291074 TFCP2L1Q9NZI6 479 aa23.2■■□□□ 1.3
VPS53-201ENST00000291074 GNPATO15228 680 aa23.2■■□□□ 1.3
VPS53-201ENST00000291074 EVX2Q03828 476 aa23.2■■□□□ 1.3
VPS53-201ENST00000291074 ARID5BQ14865 1188 aa23.2■■□□□ 1.3
VPS53-201ENST00000291074 PPP6R2O75170 966 aa23.19■■□□□ 1.3
VPS53-201ENST00000291074 PRDM1O75626 825 aa23.19■■□□□ 1.3
VPS53-201ENST00000291074 CDC25BP30305 580 aa23.19■■□□□ 1.3
VPS53-201ENST00000291074 SYKP43405 635 aa23.19■■□□□ 1.3
VPS53-201ENST00000291074 DIS3L2Q8IYB7 885 aaKnown RBP23.19■■□□□ 1.3
VPS53-201ENST00000291074 DUOX1Q9NRD9 1551 aa23.19■■□□□ 1.3
VPS53-201ENST00000291074 MMP1P03956 469 aa23.19■■□□□ 1.3
VPS53-201ENST00000291074 ZRSR1Q15695 479 aaKnown RBP23.19■■□□□ 1.3
VPS53-201ENST00000291074 SLC10A5Q5PT55 438 aa23.19■■□□□ 1.3
VPS53-201ENST00000291074 NBPF5PQ86XG9 351 aaPredicted RBP23.19■■□□□ 1.3
VPS53-201ENST00000291074 NOSTRINQ8IVI9 506 aa23.19■■□□□ 1.3
VPS53-201ENST00000291074 TRIM22Q8IYM9 498 aa23.19■■□□□ 1.3
VPS53-201ENST00000291074 FANCBQ8NB91 859 aa23.19■■□□□ 1.3
VPS53-201ENST00000291074 MRFAP1L1Q96HT8 127 aa23.19■■□□□ 1.3
VPS53-201ENST00000291074 NAT10Q9H0A0 1025 aaKnown RBP23.19■■□□□ 1.3
VPS53-201ENST00000291074 NARFQ9UHQ1 456 aa23.19■■□□□ 1.3
VPS53-201ENST00000291074 SEC23AQ15436 765 aa23.18■■□□□ 1.3
VPS53-201ENST00000291074 CRACR2BQ8N4Y2 399 aaPredicted RBP23.18■■□□□ 1.3
VPS53-201ENST00000291074 SETDB2Q96T68 719 aa23.18■■□□□ 1.3
VPS53-201ENST00000291074 HPSEQ9Y251 543 aa23.18■■□□□ 1.3
VPS53-201ENST00000291074 RPS8P62241 208 aaKnown RBP23.18■■□□□ 1.3
VPS53-201ENST00000291074 HSP90AA2PQ14568 343 aaPredicted RBP23.18■■□□□ 1.3
VPS53-201ENST00000291074 VPS72Q15906 364 aa23.18■■□□□ 1.3
VPS53-201ENST00000291074 ESR2Q92731 530 aa23.18■■□□□ 1.3
VPS53-201ENST00000291074 ANAPC4Q9UJX5 808 aa23.18■■□□□ 1.3
VPS53-201ENST00000291074 JAG2Q9Y219 1238 aa23.18■■□□□ 1.3
VPS53-201ENST00000291074 SLC51AQ86UW1 340 aa23.17■■□□□ 1.3
VPS53-201ENST00000291074 JMYQ8N9B5 988 aa23.17■■□□□ 1.3
VPS53-201ENST00000291074 WASF1Q92558 559 aa23.17■■□□□ 1.3
VPS53-201ENST00000291074 TOB1P50616 345 aaPredicted RBP23.17■■□□□ 1.3
VPS53-201ENST00000291074 NR5A1Q13285 461 aa23.17■■□□□ 1.3
VPS53-201ENST00000291074 FBXO33Q7Z6M2 555 aa23.17■■□□□ 1.3
VPS53-201ENST00000291074 COL24A1Q17RW2 1714 aa23.17■■□□□ 1.3
VPS53-201ENST00000291074 SPECC1Q5M775 1068 aa23.16■■□□□ 1.3
VPS53-201ENST00000291074 ENAHQ8N8S7 591 aaPredicted RBP23.16■■□□□ 1.3
VPS53-201ENST00000291074 NLRP3Q96P20 1036 aa23.16■■□□□ 1.3
VPS53-201ENST00000291074 TOM1O60784 492 aa23.16■■□□□ 1.3
VPS53-201ENST00000291074 RPS6KA4O75676 772 aa23.16■■□□□ 1.3
VPS53-201ENST00000291074 CHAF1AQ13111 956 aaPredicted RBP23.16■■□□□ 1.3
VPS53-201ENST00000291074 RESP18Q5W5W9 173 aa23.16■■□□□ 1.3
VPS53-201ENST00000291074 TMTC2Q8N394 836 aa23.16■■□□□ 1.3
VPS53-201ENST00000291074 DEXIO95424 95 aa23.16■■□□□ 1.3
VPS53-201ENST00000291074 NLRP12P59046 1061 aa23.16■■□□□ 1.3
VPS53-201ENST00000291074 OXER1Q8TDS5 423 aa23.16■■□□□ 1.3
VPS53-201ENST00000291074 ZPR1O75312 459 aa23.15■■□□□ 1.3
VPS53-201ENST00000291074 MECOMQ03112 1051 aa23.15■■□□□ 1.3
VPS53-201ENST00000291074 SAFBQ15424 915 aaKnown RBP eCLIP23.15■■□□□ 1.3
VPS53-201ENST00000291074 FILIP1Q7Z7B0 1213 aa23.15■■□□□ 1.3
VPS53-201ENST00000291074 MYRIPQ8NFW9 859 aa23.15■■□□□ 1.3
VPS53-201ENST00000291074 NSUN4Q96CB9 384 aaKnown RBP23.15■■□□□ 1.3
VPS53-201ENST00000291074 NYXQ9GZU5 481 aa23.15■■□□□ 1.3
VPS53-201ENST00000291074 FAM13BQ9NYF5 915 aa23.15■■□□□ 1.3
VPS53-201ENST00000291074 hCG_1642624A0A1W2PR95 340 aa23.15■■□□□ 1.3
VPS53-201ENST00000291074 GRIN1Q05586 938 aa23.15■■□□□ 1.3
VPS53-201ENST00000291074 PNOCQ13519 176 aa23.15■■□□□ 1.3
VPS53-201ENST00000291074 TXNRD3Q86VQ6 643 aa23.15■■□□□ 1.3
VPS53-201ENST00000291074 SHISA4Q96DD7 197 aa23.15■■□□□ 1.3
VPS53-201ENST00000291074 MTA3Q9BTC8 594 aa23.15■■□□□ 1.3
VPS53-201ENST00000291074 AATFQ9NY61 560 aaKnown RBP eCLIP23.15■■□□□ 1.3
VPS53-201ENST00000291074 CCDC196A0A1B0GTZ2 297 aa23.14■■□□□ 1.29
VPS53-201ENST00000291074 PRDX5P30044 214 aa23.14■■□□□ 1.29
VPS53-201ENST00000291074 CTR9Q6PD62 1173 aa23.14■■□□□ 1.29
VPS53-201ENST00000291074 TSC1Q92574 1164 aa23.14■■□□□ 1.29
VPS53-201ENST00000291074 ZSCAN10Q96SZ4 725 aaPredicted RBP23.14■■□□□ 1.29
VPS53-201ENST00000291074 BRIP1Q9BX63 1249 aa23.14■■□□□ 1.29
VPS53-201ENST00000291074 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.14■■□□□ 1.29
VPS53-201ENST00000291074 USP17L12C9JPN9 530 aa23.14■■□□□ 1.29
VPS53-201ENST00000291074 USP17L21D6R901 530 aa23.14■■□□□ 1.29
VPS53-201ENST00000291074 CCNL1Q9UK58 526 aaPredicted RBP23.14■■□□□ 1.29
VPS53-201ENST00000291074 CUTAO60888 179 aa23.13■■□□□ 1.29
VPS53-201ENST00000291074 PRIMPOLQ96LW4 560 aa23.13■■□□□ 1.29
VPS53-201ENST00000291074 TIGD1Q96MW7 591 aa23.13■■□□□ 1.29
VPS53-201ENST00000291074 DYNC1I1O14576 645 aa23.13■■□□□ 1.29
VPS53-201ENST00000291074 ATP2B1P20020 1258 aa23.13■■□□□ 1.29
VPS53-201ENST00000291074 HIBADHP31937 336 aaKnown RBP23.13■■□□□ 1.29
VPS53-201ENST00000291074 RBM6P78332 1123 aaKnown RBP23.13■■□□□ 1.29
VPS53-201ENST00000291074 LONRF3Q496Y0 759 aa23.13■■□□□ 1.29
VPS53-201ENST00000291074 RC3H1Q5TC82 1133 aaKnown RBP23.13■■□□□ 1.29
VPS53-201ENST00000291074 LRRC8AQ8IWT6 810 aa23.13■■□□□ 1.29
VPS53-201ENST00000291074 TNRC6CQ9HCJ0 1690 aaKnown RBP23.13■■□□□ 1.29
VPS53-201ENST00000291074 PCDHB6Q9Y5E3 794 aa23.12■■□□□ 1.29
VPS53-201ENST00000291074 BAZ2BQ9UIF8 2168 aaKnown RBP23.12■■□□□ 1.29
VPS53-201ENST00000291074 FAM237AA0A1B0GTK4 181 aa23.12■■□□□ 1.29
VPS53-201ENST00000291074 RRP9O43818 475 aaKnown RBP23.12■■□□□ 1.29
VPS53-201ENST00000291074 PLEKHA8P1O95397 391 aa23.12■■□□□ 1.29
VPS53-201ENST00000291074 METTL16Q86W50 562 aaKnown RBP23.12■■□□□ 1.29
VPS53-201ENST00000291074 KRI1Q8N9T8 703 aaKnown RBP23.12■■□□□ 1.29
VPS53-201ENST00000291074 ARHGEF1Q92888 912 aaKnown RBP23.12■■□□□ 1.29
VPS53-201ENST00000291074 BPIFA3Q9BQP9 254 aa23.12■■□□□ 1.29
VPS53-201ENST00000291074 FOXP1Q9H334 677 aaPredicted RBP23.12■■□□□ 1.29
VPS53-201ENST00000291074 KCNH3Q9ULD8 1083 aa23.12■■□□□ 1.29
VPS53-201ENST00000291074 RCAN1P53805 252 aa23.11■■□□□ 1.29
VPS53-201ENST00000291074 NCAPHQ15003 741 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms