RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 SMARCE1Q969G3 411 aa31.45■■■□□ 2.63
CBX4-201ENST00000269397 PCDHB6Q9Y5E3 794 aa31.45■■■□□ 2.63
CBX4-201ENST00000269397 TPM1P09493 284 aa31.45■■■□□ 2.62
CBX4-201ENST00000269397 LZTFL1Q9NQ48 299 aa31.45■■■□□ 2.62
CBX4-201ENST00000269397 SOWAHDA6NJG2 315 aa31.44■■■□□ 2.62
CBX4-201ENST00000269397 IRX5P78411 483 aaPredicted RBP31.44■■■□□ 2.62
CBX4-201ENST00000269397 GPR161Q8N6U8 529 aaKnown RBP31.44■■■□□ 2.62
CBX4-201ENST00000269397 CPLX3Q8WVH0 158 aa31.44■■■□□ 2.62
CBX4-201ENST00000269397 AIDAQ96BJ3 306 aa31.44■■■□□ 2.62
CBX4-201ENST00000269397 FBXO2Q9UK22 296 aaPredicted RBP31.44■■■□□ 2.62
CBX4-201ENST00000269397 ECM29Q5VYK3 1845 aa31.44■■■□□ 2.62
CBX4-201ENST00000269397 GYS2P54840 703 aa31.44■■■□□ 2.62
CBX4-201ENST00000269397 TOMM22Q9NS69 142 aa31.44■■■□□ 2.62
CBX4-201ENST00000269397 MYO1BO43795 1136 aa31.43■■■□□ 2.62
CBX4-201ENST00000269397 CSF1RP07333 972 aa31.43■■■□□ 2.62
CBX4-201ENST00000269397 TEX13AQ9BXU3 409 aaPredicted RBP31.43■■■□□ 2.62
CBX4-201ENST00000269397 HOOK1Q9UJC3 728 aaKnown RBP31.43■■■□□ 2.62
CBX4-201ENST00000269397 FBXO3Q9UK99 471 aa31.43■■■□□ 2.62
CBX4-201ENST00000269397 SMC1AQ14683 1233 aaKnown RBP31.43■■■□□ 2.62
CBX4-201ENST00000269397 RSRC2Q7L4I2 434 aaKnown RBP31.43■■■□□ 2.62
CBX4-201ENST00000269397 RAI14Q9P0K7 980 aa31.43■■■□□ 2.62
CBX4-201ENST00000269397 PKD1L3Q7Z443 1732 aa31.42■■■□□ 2.62
CBX4-201ENST00000269397 TEX33O43247 280 aa31.42■■■□□ 2.62
CBX4-201ENST00000269397 PCCAP05165 728 aaPredicted RBP31.42■■■□□ 2.62
CBX4-201ENST00000269397 FAM193AP78312 1265 aa31.42■■■□□ 2.62
CBX4-201ENST00000269397 HELBQ8NG08 1087 aaPredicted RBP31.42■■■□□ 2.62
CBX4-201ENST00000269397 AKAP11Q9UKA4 1901 aa31.42■■■□□ 2.62
CBX4-201ENST00000269397 MMP1P03956 469 aa31.42■■■□□ 2.62
CBX4-201ENST00000269397 KLHL10Q6JEL2 608 aa31.42■■■□□ 2.62
CBX4-201ENST00000269397 SGMS1Q86VZ5 419 aa31.42■■■□□ 2.62
CBX4-201ENST00000269397 STRBPQ96SI9 672 aaKnown RBP31.42■■■□□ 2.62
CBX4-201ENST00000269397 EPB41L4AQ9HCS5 686 aaPredicted RBP31.42■■■□□ 2.62
CBX4-201ENST00000269397 FMNL1O95466 1100 aaPredicted RBP31.42■■■□□ 2.62
CBX4-201ENST00000269397 MORC3Q14149 939 aa31.42■■■□□ 2.62
CBX4-201ENST00000269397 CREBRFQ8IUR6 639 aa31.42■■■□□ 2.62
CBX4-201ENST00000269397 ENOX1Q8TC92 643 aaKnown RBP31.42■■■□□ 2.62
CBX4-201ENST00000269397 ARFGAP3Q9NP61 516 aa31.42■■■□□ 2.62
CBX4-201ENST00000269397 GOLGA6L9A6NEM1 432 aa31.41■■■□□ 2.62
CBX4-201ENST00000269397 PTPREP23469 700 aa31.41■■■□□ 2.62
CBX4-201ENST00000269397 CASP1P29466 404 aa31.41■■■□□ 2.62
CBX4-201ENST00000269397 STX17P56962 302 aa31.41■■■□□ 2.62
CBX4-201ENST00000269397 SAFBQ15424 915 aaKnown RBP eCLIP31.41■■■□□ 2.62
CBX4-201ENST00000269397 TOM1L2Q6ZVM7 507 aa31.41■■■□□ 2.62
CBX4-201ENST00000269397 ZBTB38Q8NAP3 1195 aaPredicted RBP31.41■■■□□ 2.62
CBX4-201ENST00000269397 MLKLQ8NB16 471 aa31.41■■■□□ 2.62
CBX4-201ENST00000269397 TMEM51Q9NW97 253 aa31.41■■■□□ 2.62
CBX4-201ENST00000269397 PCDH11XQ9BZA7 1347 aa31.41■■■□□ 2.62
CBX4-201ENST00000269397 PCDH11YQ9BZA8 1340 aa31.41■■■□□ 2.62
CBX4-201ENST00000269397 KCPQ6ZWJ8 1503 aa31.41■■■□□ 2.62
CBX4-201ENST00000269397 UBE3CQ15386 1083 aa31.41■■■□□ 2.62
CBX4-201ENST00000269397 OXER1Q8TDS5 423 aa31.41■■■□□ 2.62
CBX4-201ENST00000269397 SARSP49591 514 aaKnown RBP31.4■■■□□ 2.62
CBX4-201ENST00000269397 TTLL11Q8NHH1 800 aa31.4■■■□□ 2.62
CBX4-201ENST00000269397 NUTM2AQ8IVF1 878 aaPredicted RBP31.4■■■□□ 2.62
CBX4-201ENST00000269397 UBXN6Q9BZV1 441 aa31.4■■■□□ 2.62
CBX4-201ENST00000269397 NAPBQ9H115 298 aa31.4■■■□□ 2.62
CBX4-201ENST00000269397 ABCC12Q96J65 1359 aa31.39■■■□□ 2.62
CBX4-201ENST00000269397 ERVV-2B6SEH9 535 aa31.39■■■□□ 2.62
CBX4-201ENST00000269397 ATF3P18847 181 aa31.39■■■□□ 2.62
CBX4-201ENST00000269397 TTF1Q15361 905 aaPredicted RBP31.39■■■□□ 2.62
CBX4-201ENST00000269397 RGS22Q8NE09 1264 aa31.39■■■□□ 2.62
CBX4-201ENST00000269397 TBC1D2BQ9UPU7 963 aa31.39■■■□□ 2.62
CBX4-201ENST00000269397 SNAP23O00161 211 aa31.39■■■□□ 2.61
CBX4-201ENST00000269397 NR1I3Q14994 352 aa31.39■■■□□ 2.61
CBX4-201ENST00000269397 IFNL3Q8IZI9 196 aa31.39■■■□□ 2.61
CBX4-201ENST00000269397 ARMT1Q9H993 441 aa31.39■■■□□ 2.61
CBX4-201ENST00000269397 PUF60Q9UHX1 559 aaKnown RBP31.39■■■□□ 2.61
CBX4-201ENST00000269397 HLFQ16534 295 aa31.38■■■□□ 2.61
CBX4-201ENST00000269397 TCRBV5S4A2TA0A5A2 114 aa31.38■■■□□ 2.61
CBX4-201ENST00000269397 MBD4O95243 580 aa31.38■■■□□ 2.61
CBX4-201ENST00000269397 AFMP43652 599 aa31.38■■■□□ 2.61
CBX4-201ENST00000269397 GOLGA1Q92805 767 aa31.38■■■□□ 2.61
CBX4-201ENST00000269397 FUT8Q9BYC5 575 aa31.38■■■□□ 2.61
CBX4-201ENST00000269397 CSRNP2Q9H175 543 aa31.38■■■□□ 2.61
CBX4-201ENST00000269397 PRKAB2O43741 272 aa31.37■■■□□ 2.61
CBX4-201ENST00000269397 IFNAR1P17181 557 aa31.37■■■□□ 2.61
CBX4-201ENST00000269397 NT5DC1Q5TFE4 455 aa31.37■■■□□ 2.61
CBX4-201ENST00000269397 RAD9BQ6WBX8 426 aa31.37■■■□□ 2.61
CBX4-201ENST00000269397 MST1RQ04912 1400 aa31.37■■■□□ 2.61
CBX4-201ENST00000269397 ACTN4O43707 911 aaKnown RBP31.37■■■□□ 2.61
CBX4-201ENST00000269397 KIF6Q6ZMV9 814 aa31.37■■■□□ 2.61
CBX4-201ENST00000269397 CABP5Q9NP86 173 aa31.37■■■□□ 2.61
CBX4-201ENST00000269397 AKR1B15C9JRZ8 316 aaPredicted RBP31.36■■■□□ 2.61
CBX4-201ENST00000269397 COBLO75128 1261 aa31.36■■■□□ 2.61
CBX4-201ENST00000269397 TFRCP02786 760 aaKnown RBP31.36■■■□□ 2.61
CBX4-201ENST00000269397 LIFRP42702 1097 aa31.36■■■□□ 2.61
CBX4-201ENST00000269397 MAGEB6Q8N7X4 407 aa31.36■■■□□ 2.61
CBX4-201ENST00000269397 RABGGTAQ92696 567 aa31.36■■■□□ 2.61
CBX4-201ENST00000269397 DACH1Q9UI36 760 aa31.36■■■□□ 2.61
CBX4-201ENST00000269397 RBL2Q08999 1139 aa31.36■■■□□ 2.61
CBX4-201ENST00000269397 DNAJC10Q8IXB1 793 aa31.36■■■□□ 2.61
CBX4-201ENST00000269397 SMYD4Q8IYR2 804 aaPredicted RBP31.36■■■□□ 2.61
CBX4-201ENST00000269397 NUP133Q8WUM0 1156 aa31.36■■■□□ 2.61
CBX4-201ENST00000269397 FAM205CA6NFA0 338 aa31.35■■■□□ 2.61
CBX4-201ENST00000269397 ATP8B1O43520 1251 aa31.35■■■□□ 2.61
CBX4-201ENST00000269397 CCDC175P0C221 793 aa31.35■■■□□ 2.61
CBX4-201ENST00000269397 PLA2G12BQ9BX93 195 aa31.35■■■□□ 2.61
CBX4-201ENST00000269397 STK36Q9NRP7 1315 aa31.35■■■□□ 2.61
CBX4-201ENST00000269397 RTN1Q16799 776 aa31.35■■■□□ 2.61
CBX4-201ENST00000269397 TRIM22Q8IYM9 498 aa31.35■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms