RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 EIF3HO15372 352 aaKnown RBP eCLIP8.19□□□□□ -1.1
CSDE1-201ENST00000261443 HOXB7P09629 217 aa8.19□□□□□ -1.1
CSDE1-201ENST00000261443 DDR1Q08345 913 aa8.19□□□□□ -1.1
CSDE1-201ENST00000261443 NEDD9Q14511 834 aa8.19□□□□□ -1.1
CSDE1-201ENST00000261443 ANKRD24Q8TF21 1146 aa8.19□□□□□ -1.1
CSDE1-201ENST00000261443 GPHNQ9NQX3 736 aaPredicted RBP8.19□□□□□ -1.1
CSDE1-201ENST00000261443 MYO1AQ9UBC5 1043 aa8.19□□□□□ -1.1
CSDE1-201ENST00000261443 DBNLQ9UJU6 430 aaKnown RBP8.19□□□□□ -1.1
CSDE1-201ENST00000261443 LTN1O94822 1766 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 CCDC189A1A4V9 331 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 AGPSO00116 658 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 KSR2Q6VAB6 950 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 DBF4Q9UBU7 674 aaPredicted RBP8.18□□□□□ -1.1
CSDE1-201ENST00000261443 C21orf2O43822 256 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 MFAP3LO75121 409 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 ZMYND10O75800 440 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 ELF1P32519 619 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 AMPD2Q01433 879 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 ZNF827Q17R98 1081 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 TTC19Q6DKK2 380 aaPredicted RBP8.18□□□□□ -1.1
CSDE1-201ENST00000261443 B4GALNT4Q76KP1 1039 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 RAB11FIP4Q86YS3 637 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 DSCC1Q9BVC3 393 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 SELENOOQ9BVL4 669 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 CD248Q9HCU0 757 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 RFX7Q2KHR2 1363 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 KLF18A0A0U1RQI7 1052 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 FAM237AA0A1B0GTK4 181 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 GOLGA8BA8MQT2 603 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 KCNQ3O43525 872 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 CASP14P31944 242 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 NF2P35240 595 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 POSTNQ15063 836 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 PPP2R5AQ15172 486 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 LRCH2Q5VUJ6 765 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.18□□□□□ -1.1
CSDE1-201ENST00000261443 CNGA4Q8IV77 575 aa8.18□□□□□ -1.1
CSDE1-201ENST00000261443 GSPT2Q8IYD1 628 aaKnown RBP8.18□□□□□ -1.1
CSDE1-201ENST00000261443 MED1Q15648 1581 aaPredicted RBP8.17□□□□□ -1.1
CSDE1-201ENST00000261443 NDUFAB1O14561 156 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 CHUKO15111 745 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 MDM2Q00987 491 aaPredicted RBP8.17□□□□□ -1.1
CSDE1-201ENST00000261443 PTPAQ15257 358 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 SLC9C2Q5TAH2 1124 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 DHX37Q8IY37 1157 aaKnown RBP8.17□□□□□ -1.1
CSDE1-201ENST00000261443 N4BP2L2Q92802 583 aaPredicted RBP8.17□□□□□ -1.1
CSDE1-201ENST00000261443 ZKSCAN4Q969J2 545 aaPredicted RBP8.17□□□□□ -1.1
CSDE1-201ENST00000261443 WWC3Q9ULE0 1092 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 CCDC9Q9Y3X0 531 aaKnown RBP8.17□□□□□ -1.1
CSDE1-201ENST00000261443 GRIN2DO15399 1336 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 SH3TC1Q8TE82 1336 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 TARSL2A2RTX5 802 aaKnown RBP8.17□□□□□ -1.1
CSDE1-201ENST00000261443 FSBPO95073 299 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 FNTAP49354 379 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 TNNI3KQ59H18 835 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 SPECC1Q5M775 1068 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 TTC39AQ5SRH9 613 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 VPS37DQ86XT2 251 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 TMTC1Q8IUR5 882 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 AMOTL1Q8IY63 956 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 LINS1Q8NG48 757 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 MIEF2Q96C03 454 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 MMS19Q96T76 1030 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 HAUS7Q99871 368 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 VEZTQ9HBM0 779 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 MCM8Q9UJA3 840 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 FPGT-TNNI3KV9GXZ4 949 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 MYH8P13535 1937 aa8.17□□□□□ -1.1
CSDE1-201ENST00000261443 ENC1O14682 589 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 PPP1R12AO14974 1030 aaPredicted RBP8.16□□□□□ -1.1
CSDE1-201ENST00000261443 HSPD1P10809 573 aaKnown RBP8.16□□□□□ -1.1
CSDE1-201ENST00000261443 ARHGAP25P42331 645 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 TFCP2Q12800 502 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 FILIP1LQ4L180 1135 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 TRAPPC11Q7Z392 1133 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 ANKRD18AQ8IVF6 992 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 KBTBD3Q8NAB2 608 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 CCDC51Q96ER9 411 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 LTV1Q96GA3 475 aaPredicted RBP8.16□□□□□ -1.1
CSDE1-201ENST00000261443 NBPF3Q9H094 633 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 HELLSQ9NRZ9 838 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 GUCA1BQ9UMX6 200 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 NFAT5O94916 1531 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 GOLGA8KD6RF30 607 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 MEFVO15553 781 aaPredicted RBP8.16□□□□□ -1.1
CSDE1-201ENST00000261443 FXR1P51114 621 aaKnown RBP eCLIP8.16□□□□□ -1.11e-6■■■□□ 18.2
CSDE1-201ENST00000261443 PLCD1P51178 756 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 MORC3Q14149 939 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 PROSER3Q2NL68 480 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 NBPF14Q5TI25 921 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 CCNI2Q6ZMN8 369 aaPredicted RBP8.16□□□□□ -1.1
CSDE1-201ENST00000261443 CEP120Q8N960 986 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 XAGE2Q96GT9 111 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 CAPZA3Q96KX2 299 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 MED15Q96RN5 788 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 SLF1Q9BQI6 1058 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 DBNDD2Q9BQY9 259 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 HDAC6Q9UBN7 1215 aa8.16□□□□□ -1.1
CSDE1-201ENST00000261443 ATXN2Q99700 1313 aaKnown RBP8.16□□□□□ -1.1
CSDE1-201ENST00000261443 GYPCP04921 128 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms