RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ZKSCAN3Q9BRR0 538 aa21.5■■□□□ 1.03
CPSF3-201ENST00000238112 KCNJ14Q9UNX9 436 aa21.5■■□□□ 1.03
CPSF3-201ENST00000238112 ITGB4P16144 1822 aa21.5■■□□□ 1.03
CPSF3-201ENST00000238112 CCDC196A0A1B0GTZ2 297 aa21.5■■□□□ 1.03
CPSF3-201ENST00000238112 SNAP23O00161 211 aa21.5■■□□□ 1.03
CPSF3-201ENST00000238112 PRKAB2O43741 272 aa21.5■■□□□ 1.03
CPSF3-201ENST00000238112 KMT5BQ4FZB7 885 aa21.5■■□□□ 1.03
CPSF3-201ENST00000238112 FOXP1Q9H334 677 aaPredicted RBP21.5■■□□□ 1.03
CPSF3-201ENST00000238112 LCORLQ8N3X6 602 aa21.49■■□□□ 1.03
CPSF3-201ENST00000238112 DEXIO95424 95 aa21.49■■□□□ 1.03
CPSF3-201ENST00000238112 TOB1P50616 345 aaPredicted RBP21.49■■□□□ 1.03
CPSF3-201ENST00000238112 POSTNQ15063 836 aa21.49■■□□□ 1.03
CPSF3-201ENST00000238112 TMTC2Q8N394 836 aa21.49■■□□□ 1.03
CPSF3-201ENST00000238112 CCDC82Q8N4S0 544 aa21.49■■□□□ 1.03
CPSF3-201ENST00000238112 ARAP2Q8WZ64 1704 aa21.48■■□□□ 1.03
CPSF3-201ENST00000238112 PNPLA7Q6ZV29 1317 aa21.48■■□□□ 1.03
CPSF3-201ENST00000238112 NUP98P52948 1817 aa21.48■■□□□ 1.03
CPSF3-201ENST00000238112 RNF41Q9H4P4 317 aaPredicted RBP21.48■■□□□ 1.03
CPSF3-201ENST00000238112 TIAM2Q8IVF5 1701 aa21.48■■□□□ 1.03
CPSF3-201ENST00000238112 FOXN1O15353 648 aa21.47■■□□□ 1.03
CPSF3-201ENST00000238112 PTPREP23469 700 aa21.47■■□□□ 1.03
CPSF3-201ENST00000238112 MDM2Q00987 491 aaPredicted RBP21.47■■□□□ 1.03
CPSF3-201ENST00000238112 FBXO38Q6PIJ6 1188 aa21.47■■□□□ 1.03
CPSF3-201ENST00000238112 DACH1Q9UI36 760 aa21.47■■□□□ 1.03
CPSF3-201ENST00000238112 FBXO2Q9UK22 296 aaPredicted RBP21.47■■□□□ 1.03
CPSF3-201ENST00000238112 MORC2Q9Y6X9 1032 aaPredicted RBP21.47■■□□□ 1.03
CPSF3-201ENST00000238112 ETF1P62495 437 aaKnown RBP21.47■■□□□ 1.03
CPSF3-201ENST00000238112 PDE4BQ07343 736 aa21.47■■□□□ 1.03
CPSF3-201ENST00000238112 SUSD4Q5VX71 490 aa21.47■■□□□ 1.03
CPSF3-201ENST00000238112 MTA3Q9BTC8 594 aa21.47■■□□□ 1.03
CPSF3-201ENST00000238112 TMX1Q9H3N1 280 aa21.47■■□□□ 1.03
CPSF3-201ENST00000238112 CEP131Q9UPN4 1083 aa21.47■■□□□ 1.03
CPSF3-201ENST00000238112 TMEM232C9JQI7 657 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 POLR2DO15514 142 aaKnown RBP21.46■■□□□ 1.03
CPSF3-201ENST00000238112 BMP6P22004 513 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 BCAMP50895 628 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 CRACR2BQ8N4Y2 399 aaPredicted RBP21.46■■□□□ 1.03
CPSF3-201ENST00000238112 NUP133Q8WUM0 1156 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 SEC31BQ9NQW1 1179 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 LRP2BPQ9P2M1 347 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 MAN1B1Q9UKM7 699 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 PHLPP2Q6ZVD8 1323 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 CCDC93Q567U6 631 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 MIGA1Q8NAN2 632 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 SMARCE1Q969G3 411 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 UBAC1Q9BSL1 405 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 UTP14AQ9BVJ6 771 aaKnown RBP21.46■■□□□ 1.03
CPSF3-201ENST00000238112 DNAI1Q9UI46 699 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 CHD4Q14839 1912 aa21.46■■□□□ 1.03
CPSF3-201ENST00000238112 NPHP1O15259 732 aa21.45■■□□□ 1.02
CPSF3-201ENST00000238112 IGHMBP2P38935 993 aaKnown RBP21.45■■□□□ 1.02
CPSF3-201ENST00000238112 RCAN1P53805 252 aa21.45■■□□□ 1.02
CPSF3-201ENST00000238112 GRIN1Q05586 938 aa21.45■■□□□ 1.02
CPSF3-201ENST00000238112 CMTR1Q8N1G2 835 aaKnown RBP21.45■■□□□ 1.02
CPSF3-201ENST00000238112 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.45■■□□□ 1.02
CPSF3-201ENST00000238112 DOCK2Q92608 1830 aa21.45■■□□□ 1.02
CPSF3-201ENST00000238112 NR5A1Q13285 461 aa21.45■■□□□ 1.02
CPSF3-201ENST00000238112 CCDC152Q4G0S7 254 aa21.45■■□□□ 1.02
CPSF3-201ENST00000238112 FCHSD1Q86WN1 690 aa21.45■■□□□ 1.02
CPSF3-201ENST00000238112 ZNF654Q8IZM8 581 aa21.45■■□□□ 1.02
CPSF3-201ENST00000238112 ZNF579Q8NAF0 562 aaKnown RBP21.45■■□□□ 1.02
CPSF3-201ENST00000238112 MLKLQ8NB16 471 aa21.45■■□□□ 1.02
CPSF3-201ENST00000238112 FANCBQ8NB91 859 aa21.45■■□□□ 1.02
CPSF3-201ENST00000238112 SERTAD1Q9UHV2 236 aa21.45■■□□□ 1.02
CPSF3-201ENST00000238112 PCDHB6Q9Y5E3 794 aa21.45■■□□□ 1.02
CPSF3-201ENST00000238112 EXOC5O00471 708 aa21.44■■□□□ 1.02
CPSF3-201ENST00000238112 ZSCAN12O43309 604 aa21.44■■□□□ 1.02
CPSF3-201ENST00000238112 CDK11BP21127 795 aaKnown RBP21.44■■□□□ 1.02
CPSF3-201ENST00000238112 NOL10Q9BSC4 688 aaKnown RBP21.44■■□□□ 1.02
CPSF3-201ENST00000238112 ZHX1Q9UKY1 873 aaPredicted RBP21.44■■□□□ 1.02
CPSF3-201ENST00000238112 DISP2A7MBM2 1401 aa21.44■■□□□ 1.02
CPSF3-201ENST00000238112 PPARAQ07869 468 aa21.44■■□□□ 1.02
CPSF3-201ENST00000238112 GOLGA8FQ08AF8 430 aa21.44■■□□□ 1.02
CPSF3-201ENST00000238112 GOLGA8DPQ0D2H9 430 aa21.44■■□□□ 1.02
CPSF3-201ENST00000238112 HSP90AA4PQ58FG1 418 aa21.44■■□□□ 1.02
CPSF3-201ENST00000238112 NT5DC1Q5TFE4 455 aa21.44■■□□□ 1.02
CPSF3-201ENST00000238112 KANK3Q6NY19 840 aa21.44■■□□□ 1.02
CPSF3-201ENST00000238112 KRT222Q8N1A0 295 aa21.44■■□□□ 1.02
CPSF3-201ENST00000238112 NFE2L3Q9Y4A8 694 aa21.44■■□□□ 1.02
CPSF3-201ENST00000238112 ARHGAP6O43182 974 aa21.43■■□□□ 1.02
CPSF3-201ENST00000238112 PRR29P0C7W0 189 aa21.43■■□□□ 1.02
CPSF3-201ENST00000238112 ATP2B1P20020 1258 aa21.43■■□□□ 1.02
CPSF3-201ENST00000238112 PTPN21Q16825 1174 aa21.43■■□□□ 1.02
CPSF3-201ENST00000238112 ERCC6LQ2NKX8 1250 aa21.43■■□□□ 1.02
CPSF3-201ENST00000238112 SRPRBQ9Y5M8 271 aaKnown RBP21.43■■□□□ 1.02
CPSF3-201ENST00000238112 KAT6BQ8WYB5 2073 aa21.43■■□□□ 1.02
CPSF3-201ENST00000238112 AKAP17AQ02040 695 aaKnown RBP21.43■■□□□ 1.02
CPSF3-201ENST00000238112 TRIML1Q8N9V2 468 aa21.43■■□□□ 1.02
CPSF3-201ENST00000238112 INTS13Q9NVM9 706 aa21.43■■□□□ 1.02
CPSF3-201ENST00000238112 SLIT2O94813 1529 aa21.43■■□□□ 1.02
CPSF3-201ENST00000238112 PDILTQ8N807 584 aa21.42■■□□□ 1.02
CPSF3-201ENST00000238112 ENOX1Q8TC92 643 aaKnown RBP21.42■■□□□ 1.02
CPSF3-201ENST00000238112 CABP5Q9NP86 173 aa21.42■■□□□ 1.02
CPSF3-201ENST00000238112 XBP1P17861 261 aa21.41■■□□□ 1.02
CPSF3-201ENST00000238112 CYP7A1P22680 504 aa21.41■■□□□ 1.02
CPSF3-201ENST00000238112 SARSP49591 514 aaKnown RBP21.41■■□□□ 1.02
CPSF3-201ENST00000238112 EIF5P55010 431 aaKnown RBP21.41■■□□□ 1.02
CPSF3-201ENST00000238112 GABPB1Q06547 395 aaPredicted RBP21.41■■□□□ 1.02
CPSF3-201ENST00000238112 MORC3Q14149 939 aa21.41■■□□□ 1.02
CPSF3-201ENST00000238112 OXER1Q8TDS5 423 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms