RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 NOSTRINQ8IVI9 506 aa18.7■□□□□ 0.58
UBE3D-201ENST00000237186 SEPT12Q8IYM1 358 aa18.7■□□□□ 0.58
UBE3D-201ENST00000237186 ZNF654Q8IZM8 581 aa18.7■□□□□ 0.58
UBE3D-201ENST00000237186 NSUN4Q96CB9 384 aaKnown RBP18.7■□□□□ 0.58
UBE3D-201ENST00000237186 UBAC1Q9BSL1 405 aa18.7■□□□□ 0.58
UBE3D-201ENST00000237186 FOXP1Q9H334 677 aaPredicted RBP18.7■□□□□ 0.58
UBE3D-201ENST00000237186 TOMM22Q9NS69 142 aa18.7■□□□□ 0.58
UBE3D-201ENST00000237186 PYCARDQ9ULZ3 195 aa18.7■□□□□ 0.58
UBE3D-201ENST00000237186 ZPR1O75312 459 aa18.69■□□□□ 0.58
UBE3D-201ENST00000237186 SLC3A2P08195 630 aaKnown RBP18.69■□□□□ 0.58
UBE3D-201ENST00000237186 SAFBQ15424 915 aaKnown RBP eCLIP18.69■□□□□ 0.58
UBE3D-201ENST00000237186 NBPF5PQ86XG9 351 aaPredicted RBP18.69■□□□□ 0.58
UBE3D-201ENST00000237186 ELOA2Q8IYF1 753 aaPredicted RBP18.69■□□□□ 0.58
UBE3D-201ENST00000237186 ZKSCAN3Q9BRR0 538 aa18.69■□□□□ 0.58
UBE3D-201ENST00000237186 MINDY4BA8MYZ0 360 aa18.69■□□□□ 0.58
UBE3D-201ENST00000237186 CUTAO60888 179 aa18.69■□□□□ 0.58
UBE3D-201ENST00000237186 MARCKSP29966 332 aaPredicted RBP18.69■□□□□ 0.58
UBE3D-201ENST00000237186 TM4SF1P30408 202 aa18.69■□□□□ 0.58
UBE3D-201ENST00000237186 GUCY1A2P33402 732 aa18.69■□□□□ 0.58
UBE3D-201ENST00000237186 RESP18Q5W5W9 173 aa18.69■□□□□ 0.58
UBE3D-201ENST00000237186 SHC4Q6S5L8 630 aa18.69■□□□□ 0.58
UBE3D-201ENST00000237186 DRC7Q8IY82 874 aa18.69■□□□□ 0.58
UBE3D-201ENST00000237186 SRP68Q9UHB9 627 aaKnown RBP18.69■□□□□ 0.58
UBE3D-201ENST00000237186 RTCBQ9Y3I0 505 aaKnown RBP18.69■□□□□ 0.58
UBE3D-201ENST00000237186 BTAF1O14981 1849 aa18.68■□□□□ 0.58
UBE3D-201ENST00000237186 CACNA1SQ13698 1873 aa18.68■□□□□ 0.58
UBE3D-201ENST00000237186 UBE2Q2LH0YL09 131 aa18.68■□□□□ 0.58
UBE3D-201ENST00000237186 HIBADHP31937 336 aaKnown RBP18.68■□□□□ 0.58
UBE3D-201ENST00000237186 PRIMPOLQ96LW4 560 aa18.68■□□□□ 0.58
UBE3D-201ENST00000237186 RNF26Q9BY78 433 aaPredicted RBP18.68■□□□□ 0.58
UBE3D-201ENST00000237186 QTRT2Q9H974 415 aaKnown RBP18.68■□□□□ 0.58
UBE3D-201ENST00000237186 CLIP2Q9UDT6 1046 aa18.68■□□□□ 0.58
UBE3D-201ENST00000237186 TUBE1Q9UJT0 475 aa18.68■□□□□ 0.58
UBE3D-201ENST00000237186 MROH7-TTC4A0A0A0MT08 1334 aa18.67■□□□□ 0.58
UBE3D-201ENST00000237186 TNKSO95271 1327 aa18.67■□□□□ 0.58
UBE3D-201ENST00000237186 SYKP43405 635 aa18.67■□□□□ 0.58
UBE3D-201ENST00000237186 NLRP12P59046 1061 aa18.67■□□□□ 0.58
UBE3D-201ENST00000237186 DYNLL1P63167 89 aaKnown RBP18.67■□□□□ 0.58
UBE3D-201ENST00000237186 RILPL1Q5EBL4 403 aa18.67■□□□□ 0.58
UBE3D-201ENST00000237186 DIS3L2Q8IYB7 885 aaKnown RBP18.67■□□□□ 0.58
UBE3D-201ENST00000237186 ZSCAN10Q96SZ4 725 aaPredicted RBP18.67■□□□□ 0.58
UBE3D-201ENST00000237186 MORC2Q9Y6X9 1032 aaPredicted RBP18.67■□□□□ 0.58
UBE3D-201ENST00000237186 BTBD18B2RXH4 712 aa18.67■□□□□ 0.58
UBE3D-201ENST00000237186 GNPATO15228 680 aa18.67■□□□□ 0.58
UBE3D-201ENST00000237186 SMIM5Q71RC9 77 aa18.67■□□□□ 0.58
UBE3D-201ENST00000237186 ERCC4Q92889 916 aaPredicted RBP18.67■□□□□ 0.58
UBE3D-201ENST00000237186 NRBP1Q9UHY1 535 aa18.67■□□□□ 0.58
UBE3D-201ENST00000237186 IRS2Q9Y4H2 1338 aa18.66■□□□□ 0.58
UBE3D-201ENST00000237186 TOB1P50616 345 aaPredicted RBP18.66■□□□□ 0.58
UBE3D-201ENST00000237186 ZRSR1Q15695 479 aaKnown RBP18.66■□□□□ 0.58
UBE3D-201ENST00000237186 CTR9Q6PD62 1173 aa18.66■□□□□ 0.58
UBE3D-201ENST00000237186 C17orf53Q8N3J3 647 aaPredicted RBP18.66■□□□□ 0.58
UBE3D-201ENST00000237186 ENAHQ8N8S7 591 aaPredicted RBP18.66■□□□□ 0.58
UBE3D-201ENST00000237186 ARHGEF1Q92888 912 aaKnown RBP18.66■□□□□ 0.58
UBE3D-201ENST00000237186 CCNL1Q9UK58 526 aaPredicted RBP18.66■□□□□ 0.58
UBE3D-201ENST00000237186 A0A1B0GUL6 1792 aa18.66■□□□□ 0.58
UBE3D-201ENST00000237186 A0A087WWV3 80 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 ORC4O43929 436 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 NEMFO60524 1076 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 KLRK1P26718 216 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 MECOMQ03112 1051 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 FUT2Q10981 343 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 DPCR1Q3MIW9 517 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 AOPEPQ8N6M6 819 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.65■□□□□ 0.58
UBE3D-201ENST00000237186 COL24A1Q17RW2 1714 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 NT5C2P49902 561 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 DNTTIP2Q5QJE6 756 aaKnown RBP18.65■□□□□ 0.58
UBE3D-201ENST00000237186 IQCA1Q86XH1 822 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 KRI1Q8N9T8 703 aaKnown RBP18.65■□□□□ 0.58
UBE3D-201ENST00000237186 NUP133Q8WUM0 1156 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 ATP8A2Q9NTI2 1148 aa18.65■□□□□ 0.58
UBE3D-201ENST00000237186 RBM28Q9NW13 759 aaKnown RBP18.65■□□□□ 0.58
UBE3D-201ENST00000237186 UQCRHLA0A096LP55 91 aa18.64■□□□□ 0.57
UBE3D-201ENST00000237186 SMIM22K7EJ46 135 aa18.64■□□□□ 0.57
UBE3D-201ENST00000237186 DYNC1I1O14576 645 aa18.64■□□□□ 0.57
UBE3D-201ENST00000237186 PRPF3O43395 683 aaKnown RBP18.64■□□□□ 0.57
UBE3D-201ENST00000237186 UQCRHP07919 91 aa18.64■□□□□ 0.57
UBE3D-201ENST00000237186 CALM1P0DP23 149 aa18.64■□□□□ 0.57
UBE3D-201ENST00000237186 CALM2P0DP24 149 aa18.64■□□□□ 0.57
UBE3D-201ENST00000237186 CALM3P0DP25 149 aa18.64■□□□□ 0.57
UBE3D-201ENST00000237186 PTPREP23469 700 aa18.64■□□□□ 0.57
UBE3D-201ENST00000237186 TROAPQ12815 778 aa18.64■□□□□ 0.57
UBE3D-201ENST00000237186 CCDC144BQ3MJ40 725 aa18.64■□□□□ 0.57
UBE3D-201ENST00000237186 SBK1Q52WX2 424 aa18.64■□□□□ 0.57
UBE3D-201ENST00000237186 CRNKL1Q9BZJ0 848 aaKnown RBP18.64■□□□□ 0.57
UBE3D-201ENST00000237186 KCNJ14Q9UNX9 436 aa18.64■□□□□ 0.57
UBE3D-201ENST00000237186 CHD4Q14839 1912 aa18.63■□□□□ 0.57
UBE3D-201ENST00000237186 SMTNL1A8MU46 457 aa18.63■□□□□ 0.57
UBE3D-201ENST00000237186 USP17L12C9JPN9 530 aa18.63■□□□□ 0.57
UBE3D-201ENST00000237186 USP17L21D6R901 530 aa18.63■□□□□ 0.57
UBE3D-201ENST00000237186 CATIPQ7Z7H3 387 aa18.63■□□□□ 0.57
UBE3D-201ENST00000237186 STK11IPQ8N1F8 1099 aa18.63■□□□□ 0.57
UBE3D-201ENST00000237186 ZNF579Q8NAF0 562 aaKnown RBP18.63■□□□□ 0.57
UBE3D-201ENST00000237186 MYRIPQ8NFW9 859 aa18.63■□□□□ 0.57
UBE3D-201ENST00000237186 CACTINQ8WUQ7 758 aaKnown RBP18.63■□□□□ 0.57
UBE3D-201ENST00000237186 DCP1AQ9NPI6 582 aaPredicted RBP18.63■□□□□ 0.57
UBE3D-201ENST00000237186 IKBKBO14920 756 aa18.63■□□□□ 0.57
UBE3D-201ENST00000237186 DDAH1O94760 285 aa18.63■□□□□ 0.57
UBE3D-201ENST00000237186 IFIT1BQ5T764 474 aaKnown RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms