RNA–Protein interactions for RNA: ENST00000227503.13

SF1-201, Transcript of splicing factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SF1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-201ENST00000227503 SYNE3Q6ZMZ3 975 aa16.08■□□□□ 0.16
SF1-201ENST00000227503 NOA1Q8NC60 698 aaKnown RBP16.08■□□□□ 0.16
SF1-201ENST00000227503 PAPPAQ13219 1627 aa16.08■□□□□ 0.16
SF1-201ENST00000227503 STRCP1A6NGW2 1772 aa16.08■□□□□ 0.16
SF1-201ENST00000227503 LIG3P49916 1009 aa16.08■□□□□ 0.16
SF1-201ENST00000227503 FMR1Q06787 632 aaKnown RBP eCLIP16.08■□□□□ 0.161e-11■□□□□ 9.6
SF1-201ENST00000227503 KCNG4Q8TDN1 519 aa16.08■□□□□ 0.16
SF1-201ENST00000227503 XAGE2Q96GT9 111 aa16.08■□□□□ 0.16
SF1-201ENST00000227503 DEF6Q9H4E7 631 aa16.08■□□□□ 0.16
SF1-201ENST00000227503 KIF4BQ2VIQ3 1234 aa16.07■□□□□ 0.16
SF1-201ENST00000227503 ANO1Q5XXA6 986 aa16.07■□□□□ 0.16
SF1-201ENST00000227503 RAD9BQ6WBX8 426 aa16.07■□□□□ 0.16
SF1-201ENST00000227503 EHD4Q9H223 541 aa16.07■□□□□ 0.16
SF1-201ENST00000227503 WDR17Q8IZU2 1322 aa16.07■□□□□ 0.16
SF1-201ENST00000227503 MYCNP04198 464 aaPredicted RBP16.07■□□□□ 0.16
SF1-201ENST00000227503 SCARF1Q14162 830 aa16.07■□□□□ 0.16
SF1-201ENST00000227503 HSP90B2PQ58FF3 399 aa16.07■□□□□ 0.16
SF1-201ENST00000227503 METTL16Q86W50 562 aaKnown RBP16.07■□□□□ 0.16
SF1-201ENST00000227503 KAT2BQ92831 832 aa16.07■□□□□ 0.16
SF1-201ENST00000227503 TNS2Q63HR2 1409 aa16.07■□□□□ 0.16
SF1-201ENST00000227503 FGAP02671 866 aa16.06■□□□□ 0.16
SF1-201ENST00000227503 RXRAP19793 462 aa16.06■□□□□ 0.16
SF1-201ENST00000227503 CT47A1Q5JQC4 288 aaPredicted RBP16.06■□□□□ 0.16
SF1-201ENST00000227503 TTC39AQ5SRH9 613 aa16.06■□□□□ 0.16
SF1-201ENST00000227503 SHC4Q6S5L8 630 aa16.06■□□□□ 0.16
SF1-201ENST00000227503 MB21D2Q8IYB1 491 aaPredicted RBP16.06■□□□□ 0.16
SF1-201ENST00000227503 GRAMD1CQ8IYS0 662 aa16.06■□□□□ 0.16
SF1-201ENST00000227503 PPM1EQ8WY54 764 aa16.06■□□□□ 0.16
SF1-201ENST00000227503 TEX13AQ9BXU3 409 aaPredicted RBP16.06■□□□□ 0.16
SF1-201ENST00000227503 SAMSN1Q9NSI8 373 aaKnown RBP16.06■□□□□ 0.16
SF1-201ENST00000227503 HPS5Q9UPZ3 1129 aa16.06■□□□□ 0.16
SF1-201ENST00000227503 PCDHA5Q9Y5H7 936 aa16.06■□□□□ 0.16
SF1-201ENST00000227503 ZMYND10O75800 440 aa16.06■□□□□ 0.16
SF1-201ENST00000227503 CHRM1P11229 460 aaPredicted RBP16.06■□□□□ 0.16
SF1-201ENST00000227503 CCDC57Q2TAC2 916 aa16.06■□□□□ 0.16
SF1-201ENST00000227503 CADPS2Q86UW7 1296 aa16.06■□□□□ 0.16
SF1-201ENST00000227503 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.06■□□□□ 0.16
SF1-201ENST00000227503 TEX33O43247 280 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 ZFYP08048 801 aaPredicted RBP16.05■□□□□ 0.16
SF1-201ENST00000227503 TBX2Q13207 712 aaPredicted RBP16.05■□□□□ 0.16
SF1-201ENST00000227503 TCIRG1Q13488 830 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 IMMTQ16891 758 aaKnown RBP16.05■□□□□ 0.16
SF1-201ENST00000227503 NCAPH2Q6IBW4 605 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 OLFM4Q6UX06 510 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 GSPT2Q8IYD1 628 aaKnown RBP16.05■□□□□ 0.16
SF1-201ENST00000227503 FBXO3Q9UK99 471 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 NFE2L3Q9Y4A8 694 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 COBLO75128 1261 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 RNF40O75150 1001 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 EIF3JO75822 258 aaKnown RBP16.05■□□□□ 0.16
SF1-201ENST00000227503 ANTXR2P58335 489 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 WASHC4Q2M389 1173 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 HSP90AB3PQ58FF7 597 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 FBXW10Q5XX13 1052 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 TOM1L2Q6ZVM7 507 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 FCHSD1Q86WN1 690 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 SLC35F6Q8N357 371 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 PUS7LQ9H0K6 701 aaKnown RBP16.05■□□□□ 0.16
SF1-201ENST00000227503 POLR3EQ9NVU0 708 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 PRC1O43663 620 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 STX10O60499 249 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 ACRBPQ8NEB7 543 aa16.05■□□□□ 0.16
SF1-201ENST00000227503 MYH8P13535 1937 aa16.04■□□□□ 0.16
SF1-201ENST00000227503 CMA1P23946 247 aa16.04■□□□□ 0.16
SF1-201ENST00000227503 ZAP70P43403 619 aa16.04■□□□□ 0.16
SF1-201ENST00000227503 SPECC1LQ69YQ0 1117 aa16.04■□□□□ 0.16
SF1-201ENST00000227503 TTC19Q6DKK2 380 aaPredicted RBP16.04■□□□□ 0.16
SF1-201ENST00000227503 BRMS1Q9HCU9 246 aa16.04■□□□□ 0.16
SF1-201ENST00000227503 CDC23Q9UJX2 597 aa16.04■□□□□ 0.16
SF1-201ENST00000227503 UBE2Q2LH0YL09 131 aa16.04■□□□□ 0.16
SF1-201ENST00000227503 PSEN1P49768 467 aa16.04■□□□□ 0.16
SF1-201ENST00000227503 AKAP17AQ02040 695 aaKnown RBP16.04■□□□□ 0.16
SF1-201ENST00000227503 TRIM28Q13263 835 aaKnown RBP16.04■□□□□ 0.16
SF1-201ENST00000227503 APPBP2Q92624 585 aa16.04■□□□□ 0.16
SF1-201ENST00000227503 TUBE1Q9UJT0 475 aa16.04■□□□□ 0.16
SF1-201ENST00000227503 KLF18A0A0U1RQI7 1052 aa16.03■□□□□ 0.16
SF1-201ENST00000227503 YEATS4O95619 227 aa16.03■□□□□ 0.16
SF1-201ENST00000227503 CSF1RP07333 972 aa16.03■□□□□ 0.16
SF1-201ENST00000227503 CCDC175P0C221 793 aa16.03■□□□□ 0.16
SF1-201ENST00000227503 PLA2G12BQ9BX93 195 aa16.03■□□□□ 0.16
SF1-201ENST00000227503 GOLGA8BA8MQT2 603 aa16.03■□□□□ 0.16
SF1-201ENST00000227503 PI16Q6UXB8 463 aa16.03■□□□□ 0.16
SF1-201ENST00000227503 TADA2BQ86TJ2 420 aa16.03■□□□□ 0.16
SF1-201ENST00000227503 CCDC85AQ96PX6 553 aaPredicted RBP16.03■□□□□ 0.16
SF1-201ENST00000227503 RAB21Q9UL25 225 aa16.03■□□□□ 0.16
SF1-201ENST00000227503 ERLIN1O75477 346 aa16.02■□□□□ 0.16
SF1-201ENST00000227503 FAM89AQ96GI7 184 aa16.02■□□□□ 0.16
SF1-201ENST00000227503 PRDM11Q9NQV5 511 aa16.02■□□□□ 0.16
SF1-201ENST00000227503 DDX60Q8IY21 1712 aaKnown RBP16.02■□□□□ 0.16
SF1-201ENST00000227503 ABCC12Q96J65 1359 aa16.02■□□□□ 0.16
SF1-201ENST00000227503 GOLGA6L9A6NEM1 432 aa16.02■□□□□ 0.15
SF1-201ENST00000227503 PCCAP05165 728 aaPredicted RBP16.02■□□□□ 0.15
SF1-201ENST00000227503 CCT5P48643 541 aa16.02■□□□□ 0.15
SF1-201ENST00000227503 KIF23Q02241 960 aaPredicted RBP16.02■□□□□ 0.15
SF1-201ENST00000227503 MSANTD4Q8NCY6 345 aa16.02■□□□□ 0.15
SF1-201ENST00000227503 HNRNPLLQ8WVV9 542 aaKnown RBP16.02■□□□□ 0.15
SF1-201ENST00000227503 MED15Q96RN5 788 aa16.02■□□□□ 0.15
SF1-201ENST00000227503 DENND2AQ9ULE3 1009 aa16.02■□□□□ 0.15
SF1-201ENST00000227503 ADGRG1Q9Y653 693 aa16.02■□□□□ 0.15
SF1-201ENST00000227503 COL5A2P05997 1499 aaPredicted RBP16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms