RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 WTIPA6NIX2 430 aaPredicted RBP9.56□□□□□ -0.88
VAMP3-201ENST00000054666 IGSF3O75054 1194 aa9.56□□□□□ -0.88
VAMP3-201ENST00000054666 XBP1P17861 261 aa9.56□□□□□ -0.88
VAMP3-201ENST00000054666 ST5P78524 1137 aa9.56□□□□□ -0.88
VAMP3-201ENST00000054666 IFIT1BQ5T764 474 aaKnown RBP9.56□□□□□ -0.88
VAMP3-201ENST00000054666 CATIPQ7Z7H3 387 aa9.56□□□□□ -0.88
VAMP3-201ENST00000054666 SEPT12Q8IYM1 358 aa9.56□□□□□ -0.88
VAMP3-201ENST00000054666 FMR1NBQ8N0W7 255 aaPredicted RBP9.56□□□□□ -0.88
VAMP3-201ENST00000054666 RPGRQ92834 1020 aaKnown RBP9.56□□□□□ -0.88
VAMP3-201ENST00000054666 AATFQ9NY61 560 aaKnown RBP eCLIP9.56□□□□□ -0.88
VAMP3-201ENST00000054666 LEMD3Q9Y2U8 911 aa9.56□□□□□ -0.88
VAMP3-201ENST00000054666 BECN2A8MW95 431 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 PPP6R2O75170 966 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 CALM1P0DP23 149 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 CALM2P0DP24 149 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 CALM3P0DP25 149 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 U2AF2P26368 475 aaKnown RBP eCLIP9.55□□□□□ -0.88
VAMP3-201ENST00000054666 NDUFA8P51970 172 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 NFIXQ14938 502 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 SLC39A14Q15043 492 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 AMIGO3Q86WK7 504 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 FANCBQ8NB91 859 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 ZSCAN10Q96SZ4 725 aaPredicted RBP9.55□□□□□ -0.88
VAMP3-201ENST00000054666 TRIM5Q9C035 493 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 BCL11BQ9C0K0 894 aaPredicted RBP9.55□□□□□ -0.88
VAMP3-201ENST00000054666 ATP8A2Q9NTI2 1148 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 RBM28Q9NW13 759 aaKnown RBP9.55□□□□□ -0.88
VAMP3-201ENST00000054666 XDHP47989 1333 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 ZBTB22O15209 634 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 OFD1O75665 1012 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 MMP1P03956 469 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 CMA1P23946 247 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 PRDX5P30044 214 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 SEC23AQ15436 765 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 ZNF804AQ7Z570 1209 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.55□□□□□ -0.88
VAMP3-201ENST00000054666 WDR66Q8TBY9 1149 aa9.55□□□□□ -0.88
VAMP3-201ENST00000054666 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.55□□□□□ -0.88
VAMP3-201ENST00000054666 RNF26Q9BY78 433 aaPredicted RBP9.55□□□□□ -0.88
VAMP3-201ENST00000054666 KIAA1551Q9HCM1 1747 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 MYH6P13533 1939 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 MYH2Q9UKX2 1941 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.54□□□□□ -0.88
VAMP3-201ENST00000054666 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.54□□□□□ -0.88
VAMP3-201ENST00000054666 USP17L12C9JPN9 530 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 USP17L21D6R901 530 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 DDAH1O94760 285 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 MARCKSP29966 332 aaPredicted RBP9.54□□□□□ -0.88
VAMP3-201ENST00000054666 PDE4BQ07343 736 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 CTR9Q6PD62 1173 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 NOSTRINQ8IVI9 506 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 AMOTL1Q8IY63 956 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 DRC7Q8IY82 874 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 DIS3L2Q8IYB7 885 aaKnown RBP9.54□□□□□ -0.88
VAMP3-201ENST00000054666 CRACR2BQ8N4Y2 399 aaPredicted RBP9.54□□□□□ -0.88
VAMP3-201ENST00000054666 ENAHQ8N8S7 591 aaPredicted RBP9.54□□□□□ -0.88
VAMP3-201ENST00000054666 SPC24Q8NBT2 197 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 ZNF384Q8TF68 577 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 NOL10Q9BSC4 688 aaKnown RBP9.54□□□□□ -0.88
VAMP3-201ENST00000054666 CYP2D7A0A087X1C5 515 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 ORC4O43929 436 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 LDHBP07195 334 aaKnown RBP9.54□□□□□ -0.88
VAMP3-201ENST00000054666 PFKFB1P16118 471 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 TM4SF1P30408 202 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 NT5C2P49902 561 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 GSTO1P78417 241 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 C11orf57Q6ZUT1 292 aaPredicted RBP9.54□□□□□ -0.88
VAMP3-201ENST00000054666 MPNDQ8N594 471 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 FOXP1Q9H334 677 aaPredicted RBP9.54□□□□□ -0.88
VAMP3-201ENST00000054666 DCP1AQ9NPI6 582 aaPredicted RBP9.54□□□□□ -0.88
VAMP3-201ENST00000054666 UBR3Q6ZT12 1888 aa9.54□□□□□ -0.88
VAMP3-201ENST00000054666 MROH7-TTC4A0A0A0MT08 1334 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 DLEC1Q9Y238 1755 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 AP5Z1O43299 807 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 PRDM1O75626 825 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 ZNF202O95125 648 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 HMGB2P26583 209 aaKnown RBP9.53□□□□□ -0.88
VAMP3-201ENST00000054666 SYKP43405 635 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 RILPL1Q5EBL4 403 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 SLC27A3Q5K4L6 730 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 AXDND1Q5T1B0 1012 aaPredicted RBP9.53□□□□□ -0.88
VAMP3-201ENST00000054666 PRR5LQ6MZQ0 368 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 CCDC82Q8N4S0 544 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 CTCFLQ8NI51 663 aaPredicted RBP9.53□□□□□ -0.88
VAMP3-201ENST00000054666 PIBF1Q8WXW3 757 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 TTC12Q9H892 705 aaPredicted RBP9.53□□□□□ -0.88
VAMP3-201ENST00000054666 BRMS1Q9HCU9 246 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.53□□□□□ -0.88
VAMP3-201ENST00000054666 KIAA1468Q9P260 1216 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 CEP131Q9UPN4 1083 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 JAG2Q9Y219 1238 aa9.53□□□□□ -0.88
VAMP3-201ENST00000054666 ONECUT3O60422 494 aaPredicted RBP9.52□□□□□ -0.88
VAMP3-201ENST00000054666 CUTAO60888 179 aa9.52□□□□□ -0.88
VAMP3-201ENST00000054666 FGRP09769 529 aa9.52□□□□□ -0.88
VAMP3-201ENST00000054666 GUCY1A2P33402 732 aa9.52□□□□□ -0.88
VAMP3-201ENST00000054666 USP5P45974 858 aa9.52□□□□□ -0.88
VAMP3-201ENST00000054666 ZNF75DP51815 510 aa9.52□□□□□ -0.88
VAMP3-201ENST00000054666 TPM4P67936 248 aa9.52□□□□□ -0.88
VAMP3-201ENST00000054666 SBK1Q52WX2 424 aa9.52□□□□□ -0.88
VAMP3-201ENST00000054666 NBPF11Q86T75 865 aa9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms