RNA–Protein interactions for RNA: ENST00000638794.1

SMN2-216, Transcript of survival of motor neuron 2, centromeric, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SMN2, Length 846 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN2-216ENST00000638794 A0A1B0GU69 56 aa5.81□□□□□ -1.48
SMN2-216ENST00000638794 TNP1P09430 55 aa5.8□□□□□ -1.48
SMN2-216ENST00000638794 KRTAP5-10Q6L8G5 202 aa5.78□□□□□ -1.48
SMN2-216ENST00000638794 KRTAP4-7Q9BYR0 210 aa5.7□□□□□ -1.5
SMN2-216ENST00000638794 KRTAP9-9Q9BYP9 154 aa5.68□□□□□ -1.5
SMN2-216ENST00000638794 KRTAP9-4Q9BYQ2 154 aa5.68□□□□□ -1.5
SMN2-216ENST00000638794 KRTAP12-3P60328 96 aa5.64□□□□□ -1.51
SMN2-216ENST00000638794 KRTAP4-12Q9BQ66 201 aa5.6□□□□□ -1.51
SMN2-216ENST00000638794 KRTAP5-3Q6L8H2 238 aa5.58□□□□□ -1.52
SMN2-216ENST00000638794 KRTAP20-2Q3LI61 65 aa5.56□□□□□ -1.52
SMN2-216ENST00000638794 KRTAP5-7Q6L8G8 165 aa5.56□□□□□ -1.52
SMN2-216ENST00000638794 KRTAP5-5Q701N2 237 aaPredicted RBP5.55□□□□□ -1.52
SMN2-216ENST00000638794 PRR15LQ9BU68 103 aa5.55□□□□□ -1.52
SMN2-216ENST00000638794 SPRR5A0A1B0GTR4 108 aa5.49□□□□□ -1.53
SMN2-216ENST00000638794 ANAPC13Q9BS18 74 aa5.49□□□□□ -1.53
SMN2-216ENST00000638794 LINC01558Q9Y6Z2 57 aa5.45□□□□□ -1.54
SMN2-216ENST00000638794 KRTAP12-4P60329 112 aa5.44□□□□□ -1.54
SMN2-216ENST00000638794 CCDC179H3BU77 68 aa5.42□□□□□ -1.54
SMN2-216ENST00000638794 ATP5EP56381 51 aaPredicted RBP5.41□□□□□ -1.54
SMN2-216ENST00000638794 SYNE1Q8NF91 8797 aaKnown RBP5.4□□□□□ -1.54
SMN2-216ENST00000638794 UQCR11O14957 56 aa5.37□□□□□ -1.55
SMN2-216ENST00000638794 KRTAP25-1Q3LHN0 102 aa5.36□□□□□ -1.55
SMN2-216ENST00000638794 KRTAP4-2Q9BYR5 136 aa5.27□□□□□ -1.57
SMN2-216ENST00000638794 KRTAP19-4Q3LI73 84 aa5.26□□□□□ -1.57
SMN2-216ENST00000638794 MIR22HGQ0VDD5 57 aa5.23□□□□□ -1.57
SMN2-216ENST00000638794 TMEM258P61165 79 aa5.18□□□□□ -1.58
SMN2-216ENST00000638794 KRTAP15-1Q3LI76 137 aa5.18□□□□□ -1.58
SMN2-216ENST00000638794 LCE3CQ5T5A8 94 aa5.17□□□□□ -1.58
SMN2-216ENST00000638794 K7ERS5 55 aa5.16□□□□□ -1.58
SMN2-216ENST00000638794 KRTAP23-1A1A580 65 aa5.13□□□□□ -1.59
SMN2-216ENST00000638794 KRTAP4-11Q9BYQ6 195 aa5.12□□□□□ -1.59
SMN2-216ENST00000638794 KRTAP5-2Q701N4 177 aa5.1□□□□□ -1.59
SMN2-216ENST00000638794 MT1AP04731 61 aa5.08□□□□□ -1.6
SMN2-216ENST00000638794 KRTAP6-1Q3LI64 71 aa5.08□□□□□ -1.6
SMN2-216ENST00000638794 PSPHP1O15172 72 aa5.01□□□□□ -1.61
SMN2-216ENST00000638794 KRTAP5-8O75690 187 aa4.96□□□□□ -1.62
SMN2-216ENST00000638794 V9GYY9 64 aa4.94□□□□□ -1.62
SMN2-216ENST00000638794 KRTAP9-6A8MVA2 160 aa4.91□□□□□ -1.62
SMN2-216ENST00000638794 Q1T7F1 81 aa4.9□□□□□ -1.63
SMN2-216ENST00000638794 KRTAP6-2Q3LI66 62 aa4.9□□□□□ -1.63
SMN2-216ENST00000638794 CDC42SE1Q9NRR8 79 aa4.87□□□□□ -1.63
SMN2-216ENST00000638794 MUC5ACP98088 5654 aa4.85□□□□□ -1.63
SMN2-216ENST00000638794 MUC5BQ9HC84 5762 aaPredicted RBP4.85□□□□□ -1.63
SMN2-216ENST00000638794 OBSCNQ5VST9 7968 aa4.84□□□□□ -1.63
SMN2-216ENST00000638794 AHNAKQ09666 5890 aaKnown RBP4.83□□□□□ -1.64
SMN2-216ENST00000638794 RPS28P62857 69 aaKnown RBP4.82□□□□□ -1.64
SMN2-216ENST00000638794 A6NED7 52 aa4.81□□□□□ -1.64
SMN2-216ENST00000638794 ROMO1P60602 79 aa4.78□□□□□ -1.64
SMN2-216ENST00000638794 MT3P25713 68 aa4.65□□□□□ -1.67
SMN2-216ENST00000638794 KRTAP5-1Q6L8H4 278 aa4.62□□□□□ -1.67
SMN2-216ENST00000638794 LCE1EQ5T753 118 aa4.32□□□□□ -1.72
SMN2-216ENST00000638794 LCE1BQ5T7P3 118 aa4.11□□□□□ -1.75
SMN2-216ENST00000638794 PCP4P48539 62 aa4.04□□□□□ -1.76
SMN2-216ENST00000638794 LCE1CQ5T751 118 aa4.01□□□□□ -1.77
SMN2-216ENST00000638794 H3BS24 57 aa3.99□□□□□ -1.77
SMN2-216ENST00000638794 BRK1Q8WUW1 75 aa3.82□□□□□ -1.8
SMN2-216ENST00000638794 KRTAP5-11Q6L8G4 156 aa3.67□□□□□ -1.82
SMN2-216ENST00000638794 LCE3DQ9BYE3 92 aa3.67□□□□□ -1.82
SMN2-216ENST00000638794 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.66□□□□□ -1.82
SMN2-216ENST00000638794 LCE1FQ5T754 118 aa3.6□□□□□ -1.83
SMN2-216ENST00000638794 SVIPQ8NHG7 77 aa3.6□□□□□ -1.83
SMN2-216ENST00000638794 PMAIP1Q13794 54 aa3.55□□□□□ -1.84
SMN2-216ENST00000638794 PRAC1Q96KF2 57 aa3.54□□□□□ -1.84
SMN2-216ENST00000638794 LCE3EQ5T5B0 92 aa3.41□□□□□ -1.86
SMN2-216ENST00000638794 PHGR1C9JFL3 82 aa3.37□□□□□ -1.87
SMN2-216ENST00000638794 KRTAP21-2Q3LI59 83 aa3.35□□□□□ -1.87
SMN2-216ENST00000638794 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
SMN2-216ENST00000638794 MUC19Q7Z5P9 8384 aa3.03□□□□□ -1.92
SMN2-216ENST00000638794 A0A0A0MQY5 61 aa3.02□□□□□ -1.93
SMN2-216ENST00000638794 LUZP6Q538Z0 58 aa3.01□□□□□ -1.93
SMN2-216ENST00000638794 PRO0628Q9UI54 55 aa2.99□□□□□ -1.93
SMN2-216ENST00000638794 KTN1-AS1Q86SY8 53 aa2.97□□□□□ -1.93
SMN2-216ENST00000638794 KRTAP21-1Q3LI58 79 aa2.55□□□□□ -2
SMN2-216ENST00000638794 PRM1P04553 51 aa2.45□□□□□ -2.02
SMN2-216ENST00000638794 NDUFAF8A1L188 74 aa2.37□□□□□ -2.03
SMN2-216ENST00000638794 MUC16Q8WXI7 14507 aa2.07□□□□□ -2.08
SMN2-216ENST00000638794 INE1O15225 51 aa1.57□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 1167.7 ms