RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 KRTAP5-9P26371 169 aa6.76□□□□□ -1.33
CLN3-263ENST00000637871 MUC12Q9UKN1 5478 aa6.76□□□□□ -1.33
CLN3-263ENST00000637871 SPRR2FQ96RM1 72 aa6.73□□□□□ -1.33
CLN3-263ENST00000637871 MDN1Q9NU22 5596 aa6.65□□□□□ -1.34
CLN3-263ENST00000637871 LCE3CQ5T5A8 94 aa6.64□□□□□ -1.35
CLN3-263ENST00000637871 KRTAP19-7Q3SYF9 63 aa6.63□□□□□ -1.35
CLN3-263ENST00000637871 NEBP20929 6669 aa6.58□□□□□ -1.36
CLN3-263ENST00000637871 SPRR2EP22531 72 aa6.52□□□□□ -1.37
CLN3-263ENST00000637871 SPRR2BP35325 72 aa6.52□□□□□ -1.37
CLN3-263ENST00000637871 SPRR2AP35326 72 aa6.52□□□□□ -1.37
CLN3-263ENST00000637871 A0A0A0MQY5 61 aa6.51□□□□□ -1.37
CLN3-263ENST00000637871 MT1EP04732 61 aa6.51□□□□□ -1.37
CLN3-263ENST00000637871 LCE1AQ5T7P2 110 aa6.49□□□□□ -1.37
CLN3-263ENST00000637871 MT1LQ93083 61 aa6.45□□□□□ -1.38
CLN3-263ENST00000637871 KRTAP19-3Q7Z4W3 81 aa6.3□□□□□ -1.4
CLN3-263ENST00000637871 SPRR2DP22532 72 aa6.29□□□□□ -1.4
CLN3-263ENST00000637871 LCE5AQ5TCM9 118 aa6.25□□□□□ -1.41
CLN3-263ENST00000637871 MT1GP13640 62 aa6.25□□□□□ -1.41
CLN3-263ENST00000637871 KRTAP20-1Q3LI63 56 aa6.21□□□□□ -1.41
CLN3-263ENST00000637871 KRTAP9-6A8MVA2 160 aa6.17□□□□□ -1.42
CLN3-263ENST00000637871 KRTAP4-7Q9BYR0 210 aa6.17□□□□□ -1.42
CLN3-263ENST00000637871 MT1MQ8N339 61 aa6.13□□□□□ -1.43
CLN3-263ENST00000637871 KRTAP2-3P0C7H8 128 aa6.11□□□□□ -1.43
CLN3-263ENST00000637871 KRTAP2-4Q9BYR9 128 aa6.11□□□□□ -1.43
CLN3-263ENST00000637871 LCE3BQ5TA77 95 aa6.08□□□□□ -1.44
CLN3-263ENST00000637871 KRTAP4-3Q9BYR4 195 aa6.06□□□□□ -1.44
CLN3-263ENST00000637871 INE1O15225 51 aa6.05□□□□□ -1.44
CLN3-263ENST00000637871 DSTQ03001 7570 aaKnown RBP6.04□□□□□ -1.44
CLN3-263ENST00000637871 KRTAP2-1Q9BYU5 128 aa6.01□□□□□ -1.45
CLN3-263ENST00000637871 KRTAP2-2Q9BYT5 123 aa5.95□□□□□ -1.46
CLN3-263ENST00000637871 LOC100996750A0A140TA64 210 aa5.78□□□□□ -1.48
CLN3-263ENST00000637871 KRTAP4-9Q9BYQ8 210 aa5.6□□□□□ -1.51
CLN3-263ENST00000637871 KRTAP5-5Q701N2 237 aaPredicted RBP5.56□□□□□ -1.52
CLN3-263ENST00000637871 GPR98Q8WXG9 6306 aa5.54□□□□□ -1.52
CLN3-263ENST00000637871 KRTAP5-4Q6L8H1 288 aa5.53□□□□□ -1.52
CLN3-263ENST00000637871 MT1AP04731 61 aa5.52□□□□□ -1.53
CLN3-263ENST00000637871 LCE4AQ5TA78 99 aa5.52□□□□□ -1.53
CLN3-263ENST00000637871 MT4P47944 62 aa5.51□□□□□ -1.53
CLN3-263ENST00000637871 LCE1DQ5T752 114 aa5.48□□□□□ -1.53
CLN3-263ENST00000637871 HMCN1Q96RW7 5635 aa5.42□□□□□ -1.54
CLN3-263ENST00000637871 KRTAP4-6Q9BYQ5 205 aa5.41□□□□□ -1.54
CLN3-263ENST00000637871 KRTAP6-1Q3LI64 71 aa5.38□□□□□ -1.55
CLN3-263ENST00000637871 SYNE1Q8NF91 8797 aaKnown RBP5.32□□□□□ -1.56
CLN3-263ENST00000637871 KRTAP12-4P60329 112 aa5.25□□□□□ -1.57
CLN3-263ENST00000637871 KRTAP20-2Q3LI61 65 aa5.23□□□□□ -1.57
CLN3-263ENST00000637871 KRTAP9-4Q9BYQ2 154 aa5.21□□□□□ -1.58
CLN3-263ENST00000637871 LCE3DQ9BYE3 92 aa5.07□□□□□ -1.6
CLN3-263ENST00000637871 KRTAP5-3Q6L8H2 238 aa5.05□□□□□ -1.6
CLN3-263ENST00000637871 AHNAK2Q8IVF2 5795 aa5.04□□□□□ -1.6
CLN3-263ENST00000637871 MT3P25713 68 aa5.01□□□□□ -1.61
CLN3-263ENST00000637871 LCE3EQ5T5B0 92 aa4.99□□□□□ -1.61
CLN3-263ENST00000637871 KRTAP6-2Q3LI66 62 aa4.97□□□□□ -1.61
CLN3-263ENST00000637871 KRTAP5-2Q701N4 177 aa4.94□□□□□ -1.62
CLN3-263ENST00000637871 KRTAP5-10Q6L8G5 202 aa4.89□□□□□ -1.63
CLN3-263ENST00000637871 KRTAP5-7Q6L8G8 165 aa4.79□□□□□ -1.64
CLN3-263ENST00000637871 KRTAP4-11Q9BYQ6 195 aa4.64□□□□□ -1.67
CLN3-263ENST00000637871 OBSCNQ5VST9 7968 aa4.63□□□□□ -1.67
CLN3-263ENST00000637871 KRTAP5-8O75690 187 aa4.49□□□□□ -1.69
CLN3-263ENST00000637871 PRM1P04553 51 aa4.46□□□□□ -1.7
CLN3-263ENST00000637871 KRTAP5-1Q6L8H4 278 aa4.36□□□□□ -1.71
CLN3-263ENST00000637871 LCE1EQ5T753 118 aa4.29□□□□□ -1.72
CLN3-263ENST00000637871 MUC5ACP98088 5654 aa4.27□□□□□ -1.73
CLN3-263ENST00000637871 AHNAKQ09666 5890 aaKnown RBP4.25□□□□□ -1.73
CLN3-263ENST00000637871 KRTAP9-9Q9BYP9 154 aa4.13□□□□□ -1.75
CLN3-263ENST00000637871 MUC5BQ9HC84 5762 aaPredicted RBP4.12□□□□□ -1.75
CLN3-263ENST00000637871 LCE1BQ5T7P3 118 aa4.1□□□□□ -1.75
CLN3-263ENST00000637871 KRTAP4-2Q9BYR5 136 aa4.07□□□□□ -1.76
CLN3-263ENST00000637871 LCE1CQ5T751 118 aa3.98□□□□□ -1.77
CLN3-263ENST00000637871 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.77□□□□□ -1.81
CLN3-263ENST00000637871 KRTAP4-12Q9BQ66 201 aa3.59□□□□□ -1.84
CLN3-263ENST00000637871 KRTAP5-11Q6L8G4 156 aa3.57□□□□□ -1.84
CLN3-263ENST00000637871 KRTAP21-2Q3LI59 83 aa3.53□□□□□ -1.84
CLN3-263ENST00000637871 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
CLN3-263ENST00000637871 KRTAP4-4Q9BYR3 166 aa3.19□□□□□ -1.9
CLN3-263ENST00000637871 PHGR1C9JFL3 82 aa3.08□□□□□ -1.92
CLN3-263ENST00000637871 KRTAP21-1Q3LI58 79 aa2.85□□□□□ -1.95
CLN3-263ENST00000637871 MUC19Q7Z5P9 8384 aa2.83□□□□□ -1.96
CLN3-263ENST00000637871 MUC16Q8WXI7 14507 aa2□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 132.7 ms