RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 MACF1Q9UPN3 7388 aaKnown RBP6.07□□□□□ -1.44
CLN3-252ENST00000636907 MT1LQ93083 61 aa6.01□□□□□ -1.45
CLN3-252ENST00000636907 LCE1DQ5T752 114 aa6□□□□□ -1.45
CLN3-252ENST00000636907 SPRR2FQ96RM1 72 aa5.99□□□□□ -1.45
CLN3-252ENST00000636907 SPRR5A0A1B0GTR4 108 aa5.95□□□□□ -1.46
CLN3-252ENST00000636907 LCE3CQ5T5A8 94 aa5.93□□□□□ -1.46
CLN3-252ENST00000636907 SYNE2Q8WXH0 6885 aaKnown RBP5.92□□□□□ -1.46
CLN3-252ENST00000636907 KRTAP4-2Q9BYR5 136 aa5.91□□□□□ -1.46
CLN3-252ENST00000636907 MUC12Q9UKN1 5478 aa5.91□□□□□ -1.46
CLN3-252ENST00000636907 KRTAP9-7A8MTY7 169 aa5.9□□□□□ -1.47
CLN3-252ENST00000636907 KRTAP5-9P26371 169 aa5.9□□□□□ -1.47
CLN3-252ENST00000636907 KRTAP4-9Q9BYQ8 210 aa5.9□□□□□ -1.47
CLN3-252ENST00000636907 KRTAP19-4Q3LI73 84 aa5.88□□□□□ -1.47
CLN3-252ENST00000636907 KRTAP19-3Q7Z4W3 81 aa5.87□□□□□ -1.47
CLN3-252ENST00000636907 H3BS24 57 aa5.84□□□□□ -1.47
CLN3-252ENST00000636907 MT1GP13640 62 aa5.81□□□□□ -1.48
CLN3-252ENST00000636907 KRTAP6-3Q3LI67 103 aa5.78□□□□□ -1.48
CLN3-252ENST00000636907 LCE5AQ5TCM9 118 aa5.76□□□□□ -1.49
CLN3-252ENST00000636907 MT1MQ8N339 61 aa5.76□□□□□ -1.49
CLN3-252ENST00000636907 A0A0A0MQY5 61 aa5.73□□□□□ -1.49
CLN3-252ENST00000636907 LUZP6Q538Z0 58 aa5.73□□□□□ -1.49
CLN3-252ENST00000636907 LCE1AQ5T7P2 110 aa5.72□□□□□ -1.49
CLN3-252ENST00000636907 KRTAP4-3Q9BYR4 195 aa5.68□□□□□ -1.5
CLN3-252ENST00000636907 SPRR2EP22531 72 aa5.67□□□□□ -1.5
CLN3-252ENST00000636907 SPRR2BP35325 72 aa5.67□□□□□ -1.5
CLN3-252ENST00000636907 SPRR2AP35326 72 aa5.67□□□□□ -1.5
CLN3-252ENST00000636907 MDN1Q9NU22 5596 aa5.67□□□□□ -1.5
CLN3-252ENST00000636907 KRTAP5-3Q6L8H2 238 aa5.66□□□□□ -1.5
CLN3-252ENST00000636907 NDUFAF8A1L188 74 aa5.66□□□□□ -1.5
CLN3-252ENST00000636907 KRTAP9-6A8MVA2 160 aa5.64□□□□□ -1.51
CLN3-252ENST00000636907 KRTAP4-11Q9BYQ6 195 aa5.63□□□□□ -1.51
CLN3-252ENST00000636907 SPRR2DP22532 72 aa5.46□□□□□ -1.54
CLN3-252ENST00000636907 LCE4AQ5TA78 99 aa5.41□□□□□ -1.54
CLN3-252ENST00000636907 DSTQ03001 7570 aaKnown RBP5.37□□□□□ -1.55
CLN3-252ENST00000636907 NEBP20929 6669 aa5.36□□□□□ -1.55
CLN3-252ENST00000636907 KRTAP2-3P0C7H8 128 aa5.19□□□□□ -1.58
CLN3-252ENST00000636907 KRTAP20-1Q3LI63 56 aa5.19□□□□□ -1.58
CLN3-252ENST00000636907 KRTAP5-5Q701N2 237 aaPredicted RBP5.19□□□□□ -1.58
CLN3-252ENST00000636907 KRTAP2-4Q9BYR9 128 aa5.19□□□□□ -1.58
CLN3-252ENST00000636907 KRTAP2-1Q9BYU5 128 aa5.19□□□□□ -1.58
CLN3-252ENST00000636907 MT1AP04731 61 aa5.08□□□□□ -1.6
CLN3-252ENST00000636907 KRTAP6-1Q3LI64 71 aa5.07□□□□□ -1.6
CLN3-252ENST00000636907 KRTAP2-2Q9BYT5 123 aa4.95□□□□□ -1.62
CLN3-252ENST00000636907 SYNE1Q8NF91 8797 aaKnown RBP4.94□□□□□ -1.62
CLN3-252ENST00000636907 KRTAP5-4Q6L8H1 288 aa4.93□□□□□ -1.62
CLN3-252ENST00000636907 KRTAP12-4P60329 112 aa4.79□□□□□ -1.64
CLN3-252ENST00000636907 MT4P47944 62 aa4.76□□□□□ -1.65
CLN3-252ENST00000636907 KRTAP6-2Q3LI66 62 aa4.66□□□□□ -1.66
CLN3-252ENST00000636907 KRTAP20-2Q3LI61 65 aa4.63□□□□□ -1.67
CLN3-252ENST00000636907 INE1O15225 51 aa4.62□□□□□ -1.67
CLN3-252ENST00000636907 MT3P25713 68 aa4.6□□□□□ -1.67
CLN3-252ENST00000636907 HMCN1Q96RW7 5635 aa4.59□□□□□ -1.67
CLN3-252ENST00000636907 KRTAP5-2Q701N4 177 aa4.49□□□□□ -1.69
CLN3-252ENST00000636907 LCE3DQ9BYE3 92 aa4.45□□□□□ -1.7
CLN3-252ENST00000636907 LCE3EQ5T5B0 92 aa4.33□□□□□ -1.72
CLN3-252ENST00000636907 GPR98Q8WXG9 6306 aa4.17□□□□□ -1.74
CLN3-252ENST00000636907 OBSCNQ5VST9 7968 aa4.15□□□□□ -1.75
CLN3-252ENST00000636907 AHNAK2Q8IVF2 5795 aa4.1□□□□□ -1.75
CLN3-252ENST00000636907 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.1□□□□□ -1.75
CLN3-252ENST00000636907 KRTAP5-10Q6L8G5 202 aa4.03□□□□□ -1.76
CLN3-252ENST00000636907 LCE1EQ5T753 118 aa3.97□□□□□ -1.77
CLN3-252ENST00000636907 KRTAP5-1Q6L8H4 278 aa3.88□□□□□ -1.79
CLN3-252ENST00000636907 KRTAP5-8O75690 187 aa3.85□□□□□ -1.79
CLN3-252ENST00000636907 KRTAP5-7Q6L8G8 165 aa3.84□□□□□ -1.79
CLN3-252ENST00000636907 KRTAP5-11Q6L8G4 156 aa3.82□□□□□ -1.8
CLN3-252ENST00000636907 PRM1P04553 51 aa3.81□□□□□ -1.8
CLN3-252ENST00000636907 LCE1BQ5T7P3 118 aa3.77□□□□□ -1.81
CLN3-252ENST00000636907 MUC5ACP98088 5654 aa3.72□□□□□ -1.81
CLN3-252ENST00000636907 LCE1CQ5T751 118 aa3.71□□□□□ -1.81
CLN3-252ENST00000636907 KRTAP4-4Q9BYR3 166 aa3.43□□□□□ -1.86
CLN3-252ENST00000636907 KRTAP21-2Q3LI59 83 aa3.32□□□□□ -1.88
CLN3-252ENST00000636907 MUC5BQ9HC84 5762 aaPredicted RBP3.31□□□□□ -1.88
CLN3-252ENST00000636907 AHNAKQ09666 5890 aaKnown RBP3.28□□□□□ -1.88
CLN3-252ENST00000636907 LCE1FQ5T754 118 aa2.92□□□□□ -1.94
CLN3-252ENST00000636907 PHGR1C9JFL3 82 aa2.81□□□□□ -1.96
CLN3-252ENST00000636907 MUC19Q7Z5P9 8384 aa2.49□□□□□ -2.01
CLN3-252ENST00000636907 KRTAP21-1Q3LI58 79 aa2.31□□□□□ -2.04
CLN3-252ENST00000636907 MUC16Q8WXI7 14507 aa1.84□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 135.2 ms