RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 SPINT4Q6UDR6 99 aa5.43□□□□□ -1.54
PDLIM3-213ENST00000629667 ATP5EP56381 51 aaPredicted RBP5.4□□□□□ -1.54
PDLIM3-213ENST00000629667 A0A0A0MQY5 61 aa5.37□□□□□ -1.55
PDLIM3-213ENST00000629667 SPATA8Q6RVD6 105 aa5.36□□□□□ -1.55
PDLIM3-213ENST00000629667 KRTAP9-9Q9BYP9 154 aa5.35□□□□□ -1.55
PDLIM3-213ENST00000629667 KRTAP9-4Q9BYQ2 154 aa5.35□□□□□ -1.55
PDLIM3-213ENST00000629667 C10orf95Q9H7T3 257 aa5.34□□□□□ -1.55
PDLIM3-213ENST00000629667 SEC61GP60059 68 aa5.33□□□□□ -1.56
PDLIM3-213ENST00000629667 SERP1Q9Y6X1 66 aa5.33□□□□□ -1.56
PDLIM3-213ENST00000629667 KRTAP12-1P59990 96 aa5.31□□□□□ -1.56
PDLIM3-213ENST00000629667 SPRR5A0A1B0GTR4 108 aa5.3□□□□□ -1.56
PDLIM3-213ENST00000629667 KRTAP20-2Q3LI61 65 aa5.29□□□□□ -1.56
PDLIM3-213ENST00000629667 LCE3AQ5TA76 89 aa5.29□□□□□ -1.56
PDLIM3-213ENST00000629667 A0A1B0GU33 70 aa5.25□□□□□ -1.57
PDLIM3-213ENST00000629667 KRTAP4-7Q9BYR0 210 aa5.23□□□□□ -1.57
PDLIM3-213ENST00000629667 TNP1P09430 55 aa5.21□□□□□ -1.58
PDLIM3-213ENST00000629667 RPS28P62857 69 aaKnown RBP5.19□□□□□ -1.58
PDLIM3-213ENST00000629667 KRTAP12-4P60329 112 aa5.16□□□□□ -1.58
PDLIM3-213ENST00000629667 KRTAP5-5Q701N2 237 aaPredicted RBP5.15□□□□□ -1.59
PDLIM3-213ENST00000629667 SMIM26A0A096LP01 95 aa5.12□□□□□ -1.59
PDLIM3-213ENST00000629667 A0A1B0GU69 56 aa5.12□□□□□ -1.59
PDLIM3-213ENST00000629667 KRTAP23-1A1A580 65 aa5.11□□□□□ -1.59
PDLIM3-213ENST00000629667 KRTAP12-3P60328 96 aa5.1□□□□□ -1.59
PDLIM3-213ENST00000629667 LINC01558Q9Y6Z2 57 aa5.1□□□□□ -1.59
PDLIM3-213ENST00000629667 SYNE1Q8NF91 8797 aaKnown RBP5.08□□□□□ -1.6
PDLIM3-213ENST00000629667 A8MU10 97 aa5.06□□□□□ -1.6
PDLIM3-213ENST00000629667 PRR15LQ9BU68 103 aa5.03□□□□□ -1.6
PDLIM3-213ENST00000629667 V9GYY9 64 aa5.03□□□□□ -1.6
PDLIM3-213ENST00000629667 Q1T7F1 81 aa5.01□□□□□ -1.61
PDLIM3-213ENST00000629667 KRTAP19-4Q3LI73 84 aa5□□□□□ -1.61
PDLIM3-213ENST00000629667 KRTAP4-11Q9BYQ6 195 aa4.93□□□□□ -1.62
PDLIM3-213ENST00000629667 UQCR11O14957 56 aa4.89□□□□□ -1.63
PDLIM3-213ENST00000629667 PSPHP1O15172 72 aa4.89□□□□□ -1.63
PDLIM3-213ENST00000629667 KRTAP4-2Q9BYR5 136 aa4.82□□□□□ -1.64
PDLIM3-213ENST00000629667 MIR22HGQ0VDD5 57 aa4.81□□□□□ -1.64
PDLIM3-213ENST00000629667 KRTAP5-2Q701N4 177 aa4.79□□□□□ -1.64
PDLIM3-213ENST00000629667 A6NED7 52 aa4.77□□□□□ -1.65
PDLIM3-213ENST00000629667 KRTAP5-8O75690 187 aa4.77□□□□□ -1.65
PDLIM3-213ENST00000629667 MUC5ACP98088 5654 aa4.75□□□□□ -1.65
PDLIM3-213ENST00000629667 AHNAKQ09666 5890 aaKnown RBP4.74□□□□□ -1.65
PDLIM3-213ENST00000629667 MUC5BQ9HC84 5762 aaPredicted RBP4.71□□□□□ -1.66
PDLIM3-213ENST00000629667 CDC42SE1Q9NRR8 79 aa4.69□□□□□ -1.66
PDLIM3-213ENST00000629667 OBSCNQ5VST9 7968 aa4.68□□□□□ -1.66
PDLIM3-213ENST00000629667 MT1AP04731 61 aa4.68□□□□□ -1.66
PDLIM3-213ENST00000629667 KRTAP25-1Q3LHN0 102 aa4.68□□□□□ -1.66
PDLIM3-213ENST00000629667 KRTAP6-1Q3LI64 71 aa4.68□□□□□ -1.66
PDLIM3-213ENST00000629667 LCE3CQ5T5A8 94 aa4.64□□□□□ -1.67
PDLIM3-213ENST00000629667 BRK1Q8WUW1 75 aa4.64□□□□□ -1.67
PDLIM3-213ENST00000629667 K7ERS5 55 aa4.62□□□□□ -1.67
PDLIM3-213ENST00000629667 KRTAP15-1Q3LI76 137 aa4.62□□□□□ -1.67
PDLIM3-213ENST00000629667 KRTAP6-2Q3LI66 62 aa4.56□□□□□ -1.68
PDLIM3-213ENST00000629667 PRO0628Q9UI54 55 aa4.53□□□□□ -1.68
PDLIM3-213ENST00000629667 PRAC1Q96KF2 57 aa4.44□□□□□ -1.7
PDLIM3-213ENST00000629667 ROMO1P60602 79 aa4.4□□□□□ -1.71
PDLIM3-213ENST00000629667 PMAIP1Q13794 54 aa4.39□□□□□ -1.71
PDLIM3-213ENST00000629667 KRTAP9-6A8MVA2 160 aa4.38□□□□□ -1.71
PDLIM3-213ENST00000629667 KRTAP5-1Q6L8H4 278 aa4.38□□□□□ -1.71
PDLIM3-213ENST00000629667 MT3P25713 68 aa4.32□□□□□ -1.72
PDLIM3-213ENST00000629667 KTN1-AS1Q86SY8 53 aa4.21□□□□□ -1.74
PDLIM3-213ENST00000629667 LCE1EQ5T753 118 aa4.05□□□□□ -1.76
PDLIM3-213ENST00000629667 NDUFAF8A1L188 74 aa3.9□□□□□ -1.79
PDLIM3-213ENST00000629667 LCE1BQ5T7P3 118 aa3.88□□□□□ -1.79
PDLIM3-213ENST00000629667 LCE1CQ5T751 118 aa3.76□□□□□ -1.81
PDLIM3-213ENST00000629667 LUZP6Q538Z0 58 aa3.75□□□□□ -1.81
PDLIM3-213ENST00000629667 KRTAP5-11Q6L8G4 156 aa3.46□□□□□ -1.86
PDLIM3-213ENST00000629667 LCE1FQ5T754 118 aa3.45□□□□□ -1.86
PDLIM3-213ENST00000629667 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.36□□□□□ -1.87
PDLIM3-213ENST00000629667 PHGR1C9JFL3 82 aa3.34□□□□□ -1.87
PDLIM3-213ENST00000629667 LCE3DQ9BYE3 92 aa3.27□□□□□ -1.89
PDLIM3-213ENST00000629667 KRTAP21-2Q3LI59 83 aa3.08□□□□□ -1.92
PDLIM3-213ENST00000629667 LCE3EQ5T5B0 92 aa3.01□□□□□ -1.93
PDLIM3-213ENST00000629667 MUC19Q7Z5P9 8384 aa2.91□□□□□ -1.94
PDLIM3-213ENST00000629667 KRTAP4-4Q9BYR3 166 aa2.91□□□□□ -1.94
PDLIM3-213ENST00000629667 INE1O15225 51 aa2.71□□□□□ -1.98
PDLIM3-213ENST00000629667 KRTAP21-1Q3LI58 79 aa2.53□□□□□ -2
PDLIM3-213ENST00000629667 PRM1P04553 51 aa2.28□□□□□ -2.04
PDLIM3-213ENST00000629667 MUC16Q8WXI7 14507 aa2.02□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 10.8 ms