RNA–Protein interactions for RNA: ENST00000628915.2

R3HDM1-220, Transcript of R3H domain containing 1, humanhuman

TSL 5 BASIC

Gene R3HDM1, Length 4,325 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-220ENST00000628915 LCE3EQ5T5B0 92 aa1.54□□□□□ -2.16
R3HDM1-220ENST00000628915 CRCT1Q9UGL9 99 aa1.52□□□□□ -2.17
R3HDM1-220ENST00000628915 LCE1EQ5T753 118 aa1.52□□□□□ -2.17
R3HDM1-220ENST00000628915 MUC5BQ9HC84 5762 aaPredicted RBP1.51□□□□□ -2.17
R3HDM1-220ENST00000628915 MUC19Q7Z5P9 8384 aa1.49□□□□□ -2.17
R3HDM1-220ENST00000628915 LCE3AQ5TA76 89 aa1.46□□□□□ -2.18
R3HDM1-220ENST00000628915 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.46□□□□□ -2.18
R3HDM1-220ENST00000628915 MUC12Q9UKN1 5478 aa1.46□□□□□ -2.18
R3HDM1-220ENST00000628915 KRTAP8-1Q8IUC2 63 aa1.46□□□□□ -2.18
R3HDM1-220ENST00000628915 SYNE1Q8NF91 8797 aaKnown RBP1.45□□□□□ -2.18
R3HDM1-220ENST00000628915 KRTAP5-11Q6L8G4 156 aa1.44□□□□□ -2.18
R3HDM1-220ENST00000628915 KRTAP20-1Q3LI63 56 aa1.44□□□□□ -2.18
R3HDM1-220ENST00000628915 FCGBPQ9Y6R7 5405 aaPredicted RBP1.42□□□□□ -2.18
R3HDM1-220ENST00000628915 KRTAP12-3P60328 96 aa1.42□□□□□ -2.18
R3HDM1-220ENST00000628915 KMT2DO14686 5537 aa1.41□□□□□ -2.18
R3HDM1-220ENST00000628915 HMCN1Q96RW7 5635 aa1.4□□□□□ -2.19
R3HDM1-220ENST00000628915 KRTAP12-4P60329 112 aa1.4□□□□□ -2.19
R3HDM1-220ENST00000628915 KRTAP10-12P60413 245 aa1.4□□□□□ -2.19
R3HDM1-220ENST00000628915 LCE3DQ9BYE3 92 aa1.4□□□□□ -2.19
R3HDM1-220ENST00000628915 MDN1Q9NU22 5596 aa1.39□□□□□ -2.19
R3HDM1-220ENST00000628915 NEBP20929 6669 aa1.38□□□□□ -2.19
R3HDM1-220ENST00000628915 KRTAP10-5P60370 271 aa1.38□□□□□ -2.19
R3HDM1-220ENST00000628915 SPRR2GQ9BYE4 73 aa1.38□□□□□ -2.19
R3HDM1-220ENST00000628915 KRTAP6-3Q3LI67 103 aa1.34□□□□□ -2.2
R3HDM1-220ENST00000628915 KRTAP2-3P0C7H8 128 aa1.33□□□□□ -2.2
R3HDM1-220ENST00000628915 KRTAP4-1Q9BYQ7 146 aa1.33□□□□□ -2.2
R3HDM1-220ENST00000628915 KRTAP2-4Q9BYR9 128 aa1.33□□□□□ -2.2
R3HDM1-220ENST00000628915 KRTAP2-1Q9BYU5 128 aa1.33□□□□□ -2.2
R3HDM1-220ENST00000628915 KRTAP5-7Q6L8G8 165 aa1.33□□□□□ -2.2
R3HDM1-220ENST00000628915 KRTAP19-6Q3LI70 58 aa1.31□□□□□ -2.2
R3HDM1-220ENST00000628915 KRTAP9-6A8MVA2 160 aa1.3□□□□□ -2.2
R3HDM1-220ENST00000628915 MACF1Q9UPN3 7388 aaKnown RBP1.3□□□□□ -2.2
R3HDM1-220ENST00000628915 MT1HP80294 61 aa1.3□□□□□ -2.2
R3HDM1-220ENST00000628915 KRTAP19-8Q3LI54 63 aa1.28□□□□□ -2.21
R3HDM1-220ENST00000628915 AHNAKQ09666 5890 aaKnown RBP1.27□□□□□ -2.21
R3HDM1-220ENST00000628915 PRM1P04553 51 aa1.26□□□□□ -2.21
R3HDM1-220ENST00000628915 MT1XP80297 61 aa1.26□□□□□ -2.21
R3HDM1-220ENST00000628915 KRTAP5-9P26371 169 aa1.26□□□□□ -2.21
R3HDM1-220ENST00000628915 KRTAP5-10Q6L8G5 202 aa1.25□□□□□ -2.21
R3HDM1-220ENST00000628915 AHNAK2Q8IVF2 5795 aa1.25□□□□□ -2.21
R3HDM1-220ENST00000628915 KRTAP5-1Q6L8H4 278 aa1.25□□□□□ -2.21
R3HDM1-220ENST00000628915 KRTAP19-5Q3LI72 72 aa1.24□□□□□ -2.21
R3HDM1-220ENST00000628915 KRTAP5-4Q6L8H1 288 aa1.21□□□□□ -2.21
R3HDM1-220ENST00000628915 MT1BP07438 61 aa1.21□□□□□ -2.22
R3HDM1-220ENST00000628915 FSIP2Q5CZC0 6907 aa1.21□□□□□ -2.22
R3HDM1-220ENST00000628915 SYNE2Q8WXH0 6885 aaKnown RBP1.2□□□□□ -2.22
R3HDM1-220ENST00000628915 MT2AP02795 61 aa1.2□□□□□ -2.22
R3HDM1-220ENST00000628915 MT1FP04733 61 aa1.2□□□□□ -2.22
R3HDM1-220ENST00000628915 KRTAP4-4Q9BYR3 166 aa1.18□□□□□ -2.22
R3HDM1-220ENST00000628915 DSTQ03001 7570 aaKnown RBP1.18□□□□□ -2.22
R3HDM1-220ENST00000628915 MT1EP04732 61 aa1.13□□□□□ -2.23
R3HDM1-220ENST00000628915 MT1LQ93083 61 aa1.13□□□□□ -2.23
R3HDM1-220ENST00000628915 KRTAP19-7Q3SYF9 63 aa1.11□□□□□ -2.23
R3HDM1-220ENST00000628915 MT1AP04731 61 aa1.1□□□□□ -2.23
R3HDM1-220ENST00000628915 MUC5ACP98088 5654 aa1.1□□□□□ -2.23
R3HDM1-220ENST00000628915 KRTAP4-3Q9BYR4 195 aa1.09□□□□□ -2.23
R3HDM1-220ENST00000628915 SPRR2EP22531 72 aa1.08□□□□□ -2.24
R3HDM1-220ENST00000628915 SPRR2BP35325 72 aa1.08□□□□□ -2.24
R3HDM1-220ENST00000628915 SPRR2AP35326 72 aa1.08□□□□□ -2.24
R3HDM1-220ENST00000628915 SPRR2DP22532 72 aa1.08□□□□□ -2.24
R3HDM1-220ENST00000628915 MT1GP13640 62 aa1.05□□□□□ -2.24
R3HDM1-220ENST00000628915 KRTAP5-5Q701N2 237 aaPredicted RBP1.04□□□□□ -2.24
R3HDM1-220ENST00000628915 KRTAP5-2Q701N4 177 aa1.04□□□□□ -2.24
R3HDM1-220ENST00000628915 KRTAP6-2Q3LI66 62 aa1.03□□□□□ -2.25
R3HDM1-220ENST00000628915 MT1MQ8N339 61 aa1□□□□□ -2.25
R3HDM1-220ENST00000628915 SPRR2FQ96RM1 72 aa1□□□□□ -2.25
R3HDM1-220ENST00000628915 LCE1CQ5T751 118 aa1□□□□□ -2.25
R3HDM1-220ENST00000628915 LCE1BQ5T7P3 118 aa1□□□□□ -2.25
R3HDM1-220ENST00000628915 KRTAP5-8O75690 187 aa0.99□□□□□ -2.25
R3HDM1-220ENST00000628915 KRTAP19-3Q7Z4W3 81 aa0.99□□□□□ -2.25
R3HDM1-220ENST00000628915 KRTAP6-1Q3LI64 71 aa0.93□□□□□ -2.26
R3HDM1-220ENST00000628915 MT4P47944 62 aa0.87□□□□□ -2.27
R3HDM1-220ENST00000628915 KRTAP20-2Q3LI61 65 aa0.83□□□□□ -2.28
R3HDM1-220ENST00000628915 KRTAP21-1Q3LI58 79 aa0.73□□□□□ -2.29
R3HDM1-220ENST00000628915 PHGR1C9JFL3 82 aa0.73□□□□□ -2.29
R3HDM1-220ENST00000628915 KRTAP21-2Q3LI59 83 aa0.68□□□□□ -2.3
R3HDM1-220ENST00000628915 MUC16Q8WXI7 14507 aa0.49□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 66.3 ms