RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 C10orf95Q9H7T3 257 aa8.21□□□□□ -1.1
CPSF1-214ENST00000622776 LCE3AQ5TA76 89 aa8.19□□□□□ -1.1
CPSF1-214ENST00000622776 TNP1P09430 55 aa8.07□□□□□ -1.12
CPSF1-214ENST00000622776 KRTAP5-7Q6L8G8 165 aa8.07□□□□□ -1.12
CPSF1-214ENST00000622776 SMIM26A0A096LP01 95 aa8.06□□□□□ -1.12
CPSF1-214ENST00000622776 KRTAP5-3Q6L8H2 238 aa8.04□□□□□ -1.12
CPSF1-214ENST00000622776 H7BZZ5 65 aa8.03□□□□□ -1.12
CPSF1-214ENST00000622776 A8MU10 97 aa8.01□□□□□ -1.13
CPSF1-214ENST00000622776 KRTAP4-7Q9BYR0 210 aa8□□□□□ -1.13
CPSF1-214ENST00000622776 A0A1B0GU69 56 aa7.93□□□□□ -1.14
CPSF1-214ENST00000622776 TMEM258P61165 79 aa7.93□□□□□ -1.14
CPSF1-214ENST00000622776 KRTAP20-2Q3LI61 65 aa7.92□□□□□ -1.14
CPSF1-214ENST00000622776 KRTAP12-3P60328 96 aa7.87□□□□□ -1.15
CPSF1-214ENST00000622776 ATP5EP56381 51 aaPredicted RBP7.86□□□□□ -1.15
CPSF1-214ENST00000622776 SPRR5A0A1B0GTR4 108 aa7.83□□□□□ -1.16
CPSF1-214ENST00000622776 KRTAP5-5Q701N2 237 aaPredicted RBP7.82□□□□□ -1.16
CPSF1-214ENST00000622776 RPS28P62857 69 aaKnown RBP7.81□□□□□ -1.16
CPSF1-214ENST00000622776 KRTAP12-4P60329 112 aa7.74□□□□□ -1.17
CPSF1-214ENST00000622776 SYNE1Q8NF91 8797 aaKnown RBP7.71□□□□□ -1.17
CPSF1-214ENST00000622776 LOC100996750A0A140TA64 210 aa7.6□□□□□ -1.19
CPSF1-214ENST00000622776 PRR15LQ9BU68 103 aa7.54□□□□□ -1.2
CPSF1-214ENST00000622776 KRTAP25-1Q3LHN0 102 aa7.39□□□□□ -1.23
CPSF1-214ENST00000622776 KRTAP19-4Q3LI73 84 aa7.38□□□□□ -1.23
CPSF1-214ENST00000622776 LINC01558Q9Y6Z2 57 aa7.38□□□□□ -1.23
CPSF1-214ENST00000622776 Q1T7F1 81 aa7.35□□□□□ -1.23
CPSF1-214ENST00000622776 KRTAP4-11Q9BYQ6 195 aa7.34□□□□□ -1.23
CPSF1-214ENST00000622776 PRO0628Q9UI54 55 aa7.32□□□□□ -1.24
CPSF1-214ENST00000622776 V9GYY9 64 aa7.32□□□□□ -1.24
CPSF1-214ENST00000622776 UQCR11O14957 56 aa7.29□□□□□ -1.24
CPSF1-214ENST00000622776 KRTAP5-2Q701N4 177 aa7.24□□□□□ -1.25
CPSF1-214ENST00000622776 KRTAP15-1Q3LI76 137 aa7.2□□□□□ -1.26
CPSF1-214ENST00000622776 LCE3CQ5T5A8 94 aa7.2□□□□□ -1.26
CPSF1-214ENST00000622776 PSPHP1O15172 72 aa7.19□□□□□ -1.26
CPSF1-214ENST00000622776 MT1AP04731 61 aa7.16□□□□□ -1.26
CPSF1-214ENST00000622776 KRTAP6-1Q3LI64 71 aa7.15□□□□□ -1.26
CPSF1-214ENST00000622776 AHNAKQ09666 5890 aaKnown RBP7.12□□□□□ -1.27
CPSF1-214ENST00000622776 KRTAP5-8O75690 187 aa7.11□□□□□ -1.27
CPSF1-214ENST00000622776 KRTAP23-1A1A580 65 aa7.08□□□□□ -1.28
CPSF1-214ENST00000622776 MIR22HGQ0VDD5 57 aa7.08□□□□□ -1.28
CPSF1-214ENST00000622776 MUC5ACP98088 5654 aa7.06□□□□□ -1.28
CPSF1-214ENST00000622776 MUC5BQ9HC84 5762 aaPredicted RBP7.05□□□□□ -1.28
CPSF1-214ENST00000622776 K7ERS5 55 aa7.04□□□□□ -1.28
CPSF1-214ENST00000622776 OBSCNQ5VST9 7968 aa6.98□□□□□ -1.29
CPSF1-214ENST00000622776 BRK1Q8WUW1 75 aa6.98□□□□□ -1.29
CPSF1-214ENST00000622776 A6NED7 52 aa6.97□□□□□ -1.29
CPSF1-214ENST00000622776 KRTAP9-4Q9BYQ2 154 aa6.96□□□□□ -1.3
CPSF1-214ENST00000622776 KRTAP6-2Q3LI66 62 aa6.92□□□□□ -1.3
CPSF1-214ENST00000622776 CDC42SE1Q9NRR8 79 aa6.87□□□□□ -1.31
CPSF1-214ENST00000622776 PMAIP1Q13794 54 aa6.86□□□□□ -1.31
CPSF1-214ENST00000622776 KRTAP9-6A8MVA2 160 aa6.82□□□□□ -1.32
CPSF1-214ENST00000622776 KRTAP9-9Q9BYP9 154 aa6.82□□□□□ -1.32
CPSF1-214ENST00000622776 KTN1-AS1Q86SY8 53 aa6.67□□□□□ -1.34
CPSF1-214ENST00000622776 KRTAP5-1Q6L8H4 278 aa6.58□□□□□ -1.36
CPSF1-214ENST00000622776 MT3P25713 68 aa6.57□□□□□ -1.36
CPSF1-214ENST00000622776 ROMO1P60602 79 aa6.47□□□□□ -1.37
CPSF1-214ENST00000622776 LCE1EQ5T753 118 aa6.14□□□□□ -1.43
CPSF1-214ENST00000622776 PRAC1Q96KF2 57 aa6.06□□□□□ -1.44
CPSF1-214ENST00000622776 KRTAP4-2Q9BYR5 136 aa5.85□□□□□ -1.47
CPSF1-214ENST00000622776 LCE1BQ5T7P3 118 aa5.83□□□□□ -1.48
CPSF1-214ENST00000622776 H3BS24 57 aa5.72□□□□□ -1.49
CPSF1-214ENST00000622776 LCE1CQ5T751 118 aa5.7□□□□□ -1.5
CPSF1-214ENST00000622776 KRTAP4-12Q9BQ66 201 aa5.48□□□□□ -1.53
CPSF1-214ENST00000622776 KRTAP5-11Q6L8G4 156 aa5.2□□□□□ -1.58
CPSF1-214ENST00000622776 LUZP6Q538Z0 58 aa5.19□□□□□ -1.58
CPSF1-214ENST00000622776 NDUFAF8A1L188 74 aa5.18□□□□□ -1.58
CPSF1-214ENST00000622776 LCE1FQ5T754 118 aa5.16□□□□□ -1.58
CPSF1-214ENST00000622776 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.13□□□□□ -1.59
CPSF1-214ENST00000622776 A0A0A0MQY5 61 aa5.11□□□□□ -1.59
CPSF1-214ENST00000622776 LCE3DQ9BYE3 92 aa5.1□□□□□ -1.59
CPSF1-214ENST00000622776 PHGR1C9JFL3 82 aa4.87□□□□□ -1.63
CPSF1-214ENST00000622776 KRTAP21-2Q3LI59 83 aa4.72□□□□□ -1.65
CPSF1-214ENST00000622776 LCE3EQ5T5B0 92 aa4.72□□□□□ -1.65
CPSF1-214ENST00000622776 INE1O15225 51 aa4.66□□□□□ -1.66
CPSF1-214ENST00000622776 KRTAP4-4Q9BYR3 166 aa4.4□□□□□ -1.71
CPSF1-214ENST00000622776 MUC19Q7Z5P9 8384 aa4.36□□□□□ -1.71
CPSF1-214ENST00000622776 KRTAP21-1Q3LI58 79 aa3.7□□□□□ -1.82
CPSF1-214ENST00000622776 PRM1P04553 51 aa3.29□□□□□ -1.88
CPSF1-214ENST00000622776 MUC16Q8WXI7 14507 aa3.04□□□□□ -1.92
Retrieved 78 of 20,778 RNA–protein pairs in 175.5 ms