RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 KRTAP15-1Q3LI76 137 aa6.14□□□□□ -1.43
HMGN3-203ENST00000620514 CCDC179H3BU77 68 aa6.13□□□□□ -1.43
HMGN3-203ENST00000620514 C10orf95Q9H7T3 257 aa6.13□□□□□ -1.43
HMGN3-203ENST00000620514 LCE3AQ5TA76 89 aa6.11□□□□□ -1.43
HMGN3-203ENST00000620514 PP632Q6XCG6 107 aa6.11□□□□□ -1.43
HMGN3-203ENST00000620514 MT1MQ8N339 61 aa6.11□□□□□ -1.43
HMGN3-203ENST00000620514 MT1LQ93083 61 aa6.11□□□□□ -1.43
HMGN3-203ENST00000620514 GPR98Q8WXG9 6306 aa6.1□□□□□ -1.43
HMGN3-203ENST00000620514 TNP1P09430 55 aa6.06□□□□□ -1.44
HMGN3-203ENST00000620514 PRR15LQ9BU68 103 aa6.03□□□□□ -1.44
HMGN3-203ENST00000620514 ATP5EP56381 51 aaPredicted RBP6.01□□□□□ -1.45
HMGN3-203ENST00000620514 KRTAP4-3Q9BYR4 195 aa6□□□□□ -1.45
HMGN3-203ENST00000620514 LINC01558Q9Y6Z2 57 aa6□□□□□ -1.45
HMGN3-203ENST00000620514 MT4P47944 62 aa5.94□□□□□ -1.46
HMGN3-203ENST00000620514 HMCN1Q96RW7 5635 aa5.91□□□□□ -1.46
HMGN3-203ENST00000620514 KRTAP12-3P60328 96 aa5.85□□□□□ -1.47
HMGN3-203ENST00000620514 KRTAP5-4Q6L8H1 288 aa5.85□□□□□ -1.47
HMGN3-203ENST00000620514 UQCR11O14957 56 aa5.84□□□□□ -1.47
HMGN3-203ENST00000620514 TMEM258P61165 79 aa5.84□□□□□ -1.47
HMGN3-203ENST00000620514 AHNAK2Q8IVF2 5795 aa5.75□□□□□ -1.49
HMGN3-203ENST00000620514 MIR22HGQ0VDD5 57 aa5.72□□□□□ -1.49
HMGN3-203ENST00000620514 KRTAP5-3Q6L8H2 238 aa5.71□□□□□ -1.5
HMGN3-203ENST00000620514 KRTAP25-1Q3LHN0 102 aa5.68□□□□□ -1.5
HMGN3-203ENST00000620514 KRTAP5-10Q6L8G5 202 aa5.6□□□□□ -1.51
HMGN3-203ENST00000620514 KRTAP5-5Q701N2 237 aaPredicted RBP5.6□□□□□ -1.51
HMGN3-203ENST00000620514 K7ERS5 55 aa5.59□□□□□ -1.51
HMGN3-203ENST00000620514 PSPHP1O15172 72 aa5.59□□□□□ -1.51
HMGN3-203ENST00000620514 KRTAP20-2Q3LI61 65 aa5.53□□□□□ -1.52
HMGN3-203ENST00000620514 V9GYY9 64 aa5.52□□□□□ -1.53
HMGN3-203ENST00000620514 Q1T7F1 81 aa5.51□□□□□ -1.53
HMGN3-203ENST00000620514 SPRR5A0A1B0GTR4 108 aa5.47□□□□□ -1.53
HMGN3-203ENST00000620514 SYNE1Q8NF91 8797 aaKnown RBP5.44□□□□□ -1.54
HMGN3-203ENST00000620514 KRTAP12-4P60329 112 aa5.44□□□□□ -1.54
HMGN3-203ENST00000620514 LCE3CQ5T5A8 94 aa5.38□□□□□ -1.55
HMGN3-203ENST00000620514 KRTAP5-7Q6L8G8 165 aa5.38□□□□□ -1.55
HMGN3-203ENST00000620514 A6NED7 52 aa5.37□□□□□ -1.55
HMGN3-203ENST00000620514 SVIPQ8NHG7 77 aa5.33□□□□□ -1.56
HMGN3-203ENST00000620514 CDC42SE1Q9NRR8 79 aa5.3□□□□□ -1.56
HMGN3-203ENST00000620514 ROMO1P60602 79 aa5.23□□□□□ -1.57
HMGN3-203ENST00000620514 MT1AP04731 61 aa5.19□□□□□ -1.58
HMGN3-203ENST00000620514 PCP4P48539 62 aa5.19□□□□□ -1.58
HMGN3-203ENST00000620514 KRTAP6-1Q3LI64 71 aa5.19□□□□□ -1.58
HMGN3-203ENST00000620514 RPS28P62857 69 aaKnown RBP5.15□□□□□ -1.59
HMGN3-203ENST00000620514 KRTAP9-6A8MVA2 160 aa5.12□□□□□ -1.59
HMGN3-203ENST00000620514 KRTAP5-2Q701N4 177 aa5.11□□□□□ -1.59
HMGN3-203ENST00000620514 A0A0A0MQY5 61 aa5.02□□□□□ -1.61
HMGN3-203ENST00000620514 KRTAP6-2Q3LI66 62 aa4.96□□□□□ -1.62
HMGN3-203ENST00000620514 KRTAP5-8O75690 187 aa4.9□□□□□ -1.63
HMGN3-203ENST00000620514 OBSCNQ5VST9 7968 aa4.81□□□□□ -1.64
HMGN3-203ENST00000620514 MT3P25713 68 aa4.8□□□□□ -1.64
HMGN3-203ENST00000620514 AHNAKQ09666 5890 aaKnown RBP4.76□□□□□ -1.65
HMGN3-203ENST00000620514 MUC5BQ9HC84 5762 aaPredicted RBP4.73□□□□□ -1.65
HMGN3-203ENST00000620514 MUC5ACP98088 5654 aa4.71□□□□□ -1.65
HMGN3-203ENST00000620514 KRTAP5-1Q6L8H4 278 aa4.61□□□□□ -1.67
HMGN3-203ENST00000620514 BRK1Q8WUW1 75 aa4.49□□□□□ -1.69
HMGN3-203ENST00000620514 LCE1EQ5T753 118 aa4.48□□□□□ -1.69
HMGN3-203ENST00000620514 KRTAP5-11Q6L8G4 156 aa4.43□□□□□ -1.7
HMGN3-203ENST00000620514 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.32□□□□□ -1.72
HMGN3-203ENST00000620514 LCE1FQ5T754 118 aa4.26□□□□□ -1.73
HMGN3-203ENST00000620514 PMAIP1Q13794 54 aa4.19□□□□□ -1.74
HMGN3-203ENST00000620514 NDUFAF8A1L188 74 aa4.16□□□□□ -1.74
HMGN3-203ENST00000620514 LCE1BQ5T7P3 118 aa4.15□□□□□ -1.75
HMGN3-203ENST00000620514 PRAC1Q96KF2 57 aa4.15□□□□□ -1.75
HMGN3-203ENST00000620514 LCE1CQ5T751 118 aa4.04□□□□□ -1.76
HMGN3-203ENST00000620514 LCE3DQ9BYE3 92 aa3.85□□□□□ -1.79
HMGN3-203ENST00000620514 PRO0628Q9UI54 55 aa3.74□□□□□ -1.81
HMGN3-203ENST00000620514 LCE3EQ5T5B0 92 aa3.64□□□□□ -1.83
HMGN3-203ENST00000620514 KTN1-AS1Q86SY8 53 aa3.63□□□□□ -1.83
HMGN3-203ENST00000620514 KRTAP4-4Q9BYR3 166 aa3.57□□□□□ -1.84
HMGN3-203ENST00000620514 LUZP6Q538Z0 58 aa3.43□□□□□ -1.86
HMGN3-203ENST00000620514 KRTAP21-2Q3LI59 83 aa3.41□□□□□ -1.86
HMGN3-203ENST00000620514 PHGR1C9JFL3 82 aa3.26□□□□□ -1.89
HMGN3-203ENST00000620514 MUC19Q7Z5P9 8384 aa2.97□□□□□ -1.93
HMGN3-203ENST00000620514 PRM1P04553 51 aa2.69□□□□□ -1.98
HMGN3-203ENST00000620514 KRTAP21-1Q3LI58 79 aa2.46□□□□□ -2.02
HMGN3-203ENST00000620514 MUC16Q8WXI7 14507 aa2.13□□□□□ -2.07
HMGN3-203ENST00000620514 INE1O15225 51 aa2.03□□□□□ -2.08
Retrieved 77 of 20,778 RNA–protein pairs in 55.9 ms