RNA–Protein interactions for RNA: ENST00000615442.1

PVT1-223, Transcript of Pvt1 oncogene, human

Gene PVT1, Length 165 nt, Biotype misc RNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-223	ENST00000615442	MUC12	Q9UKN1	5478 aa		3.89	□□□□□ -1.79
PVT1-223	ENST00000615442	MT1E	P04732	61 aa		3.88	□□□□□ -1.79
PVT1-223	ENST00000615442	KRTAP23-1	A1A580	65 aa		3.85	□□□□□ -1.79
PVT1-223	ENST00000615442	MDN1	Q9NU22	5596 aa		3.81	□□□□□ -1.8
PVT1-223	ENST00000615442	KRTAP19-3	Q7Z4W3	81 aa		3.8	□□□□□ -1.8
PVT1-223	ENST00000615442	SPRR2D	P22532	72 aa		3.79	□□□□□ -1.8
PVT1-223	ENST00000615442	KRTAP12-3	P60328	96 aa		3.79	□□□□□ -1.8
PVT1-223	ENST00000615442	LCE5A	Q5TCM9	118 aa		3.78	□□□□□ -1.8
PVT1-223	ENST00000615442	MT1G	P13640	62 aa		3.77	□□□□□ -1.81
PVT1-223	ENST00000615442	KRTAP20-1	Q3LI63	56 aa		3.77	□□□□□ -1.81
PVT1-223	ENST00000615442	KRTAP2-3	P0C7H8	128 aa		3.76	□□□□□ -1.81
PVT1-223	ENST00000615442	PP632	Q6XCG6	107 aa		3.76	□□□□□ -1.81
PVT1-223	ENST00000615442	KRTAP2-4	Q9BYR9	128 aa		3.76	□□□□□ -1.81
PVT1-223	ENST00000615442	MT1L	Q93083	61 aa		3.75	□□□□□ -1.81
PVT1-223	ENST00000615442	LCE3B	Q5TA77	95 aa		3.67	□□□□□ -1.82
PVT1-223	ENST00000615442	MT1M	Q8N339	61 aa		3.67	□□□□□ -1.82
PVT1-223	ENST00000615442	KRTAP19-4	Q3LI73	84 aa		3.66	□□□□□ -1.82
PVT1-223	ENST00000615442	KRTAP2-2	Q9BYT5	123 aa		3.66	□□□□□ -1.82
PVT1-223	ENST00000615442	KRTAP2-1	Q9BYU5	128 aa		3.66	□□□□□ -1.82
PVT1-223	ENST00000615442	KRTAP15-1	Q3LI76	137 aa		3.64	□□□□□ -1.83
PVT1-223	ENST00000615442	NDUFAF8	A1L188	74 aa		3.56	□□□□□ -1.84
PVT1-223	ENST00000615442	KRTAP4-7	Q9BYR0	210 aa		3.56	□□□□□ -1.84
PVT1-223	ENST00000615442	KRTAP4-3	Q9BYR4	195 aa		3.56	□□□□□ -1.84
PVT1-223	ENST00000615442	DST	Q03001	7570 aa	Known RBP	3.56	□□□□□ -1.84
PVT1-223	ENST00000615442		A0A0A0MQY5	61 aa		3.55	□□□□□ -1.84
PVT1-223	ENST00000615442	LCE3C	Q5T5A8	94 aa		3.53	□□□□□ -1.84
PVT1-223	ENST00000615442	LUZP6	Q538Z0	58 aa		3.46	□□□□□ -1.86
PVT1-223	ENST00000615442	LCE4A	Q5TA78	99 aa		3.39	□□□□□ -1.87
PVT1-223	ENST00000615442	KRTAP5-4	Q6L8H1	288 aa		3.37	□□□□□ -1.87
PVT1-223	ENST00000615442	LOC100996750	A0A140TA64	210 aa		3.36	□□□□□ -1.87
PVT1-223	ENST00000615442	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.35	□□□□□ -1.87
PVT1-223	ENST00000615442	KRTAP4-9	Q9BYQ8	210 aa		3.33	□□□□□ -1.88
PVT1-223	ENST00000615442	KRTAP9-6	A8MVA2	160 aa		3.29	□□□□□ -1.88
PVT1-223	ENST00000615442	LCE1D	Q5T752	114 aa		3.29	□□□□□ -1.88
PVT1-223	ENST00000615442	MT4	P47944	62 aa		3.28	□□□□□ -1.88
PVT1-223	ENST00000615442	KRTAP4-6	Q9BYQ5	205 aa		3.22	□□□□□ -1.89
PVT1-223	ENST00000615442	KRTAP12-4	P60329	112 aa		3.21	□□□□□ -1.9
PVT1-223	ENST00000615442	MT1A	P04731	61 aa		3.2	□□□□□ -1.9
PVT1-223	ENST00000615442	SPRR5	A0A1B0GTR4	108 aa		3.19	□□□□□ -1.9
PVT1-223	ENST00000615442	GPR98	Q8WXG9	6306 aa		3.15	□□□□□ -1.9
PVT1-223	ENST00000615442	KRTAP20-2	Q3LI61	65 aa		3.15	□□□□□ -1.91
PVT1-223	ENST00000615442	KRTAP6-1	Q3LI64	71 aa		3.15	□□□□□ -1.91
PVT1-223	ENST00000615442	SYNE1	Q8NF91	8797 aa	Known RBP	3.15	□□□□□ -1.91
PVT1-223	ENST00000615442	HMCN1	Q96RW7	5635 aa		3.14	□□□□□ -1.91
PVT1-223	ENST00000615442	KRTAP9-4	Q9BYQ2	154 aa		3.09	□□□□□ -1.91
PVT1-223	ENST00000615442	INE1	O15225	51 aa		3.05	□□□□□ -1.92
PVT1-223	ENST00000615442	KRTAP5-3	Q6L8H2	238 aa		3.05	□□□□□ -1.92
PVT1-223	ENST00000615442	KRTAP5-2	Q701N4	177 aa		2.99	□□□□□ -1.93
PVT1-223	ENST00000615442	KRTAP6-2	Q3LI66	62 aa		2.97	□□□□□ -1.93
PVT1-223	ENST00000615442	AHNAK2	Q8IVF2	5795 aa		2.96	□□□□□ -1.94
PVT1-223	ENST00000615442	MT3	P25713	68 aa		2.93	□□□□□ -1.94
PVT1-223	ENST00000615442	KRTAP5-10	Q6L8G5	202 aa		2.93	□□□□□ -1.94
PVT1-223	ENST00000615442	KRTAP4-11	Q9BYQ6	195 aa		2.82	□□□□□ -1.96
PVT1-223	ENST00000615442	KRTAP5-7	Q6L8G8	165 aa		2.8	□□□□□ -1.96
PVT1-223	ENST00000615442	KRTAP5-8	O75690	187 aa		2.72	□□□□□ -1.97
PVT1-223	ENST00000615442	OBSCN	Q5VST9	7968 aa		2.7	□□□□□ -1.98
PVT1-223	ENST00000615442	LCE1E	Q5T753	118 aa		2.65	□□□□□ -1.99
PVT1-223	ENST00000615442	KRTAP5-1	Q6L8H4	278 aa		2.63	□□□□□ -1.99
PVT1-223	ENST00000615442	LCE3D	Q9BYE3	92 aa		2.6	□□□□□ -1.99
PVT1-223	ENST00000615442	KRTAP9-9	Q9BYP9	154 aa		2.54	□□□□□ -2
PVT1-223	ENST00000615442	KRTAP4-12	Q9BQ66	201 aa		2.51	□□□□□ -2.01
PVT1-223	ENST00000615442	LCE3E	Q5T5B0	92 aa		2.49	□□□□□ -2.01
PVT1-223	ENST00000615442	AHNAK	Q09666	5890 aa	Known RBP	2.45	□□□□□ -2.02
PVT1-223	ENST00000615442	LCE1C	Q5T751	118 aa		2.45	□□□□□ -2.02
PVT1-223	ENST00000615442	LCE1B	Q5T7P3	118 aa		2.45	□□□□□ -2.02
PVT1-223	ENST00000615442	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.45	□□□□□ -2.02
PVT1-223	ENST00000615442	KRTAP4-2	Q9BYR5	136 aa		2.44	□□□□□ -2.02
PVT1-223	ENST00000615442	MUC5AC	P98088	5654 aa		2.44	□□□□□ -2.02
PVT1-223	ENST00000615442	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.26	□□□□□ -2.05
PVT1-223	ENST00000615442	KRTAP5-11	Q6L8G4	156 aa		2.18	□□□□□ -2.06
PVT1-223	ENST00000615442	KRTAP21-2	Q3LI59	83 aa		2.09	□□□□□ -2.07
PVT1-223	ENST00000615442	LCE1F	Q5T754	118 aa		2.09	□□□□□ -2.07
PVT1-223	ENST00000615442	PRM1	P04553	51 aa		1.99	□□□□□ -2.09
PVT1-223	ENST00000615442	PHGR1	C9JFL3	82 aa		1.88	□□□□□ -2.11
PVT1-223	ENST00000615442	KRTAP4-4	Q9BYR3	166 aa		1.84	□□□□□ -2.11
PVT1-223	ENST00000615442	MUC19	Q7Z5P9	8384 aa		1.65	□□□□□ -2.15
PVT1-223	ENST00000615442	KRTAP21-1	Q3LI58	79 aa		1.3	□□□□□ -2.2
PVT1-223	ENST00000615442	MUC16	Q8WXI7	14507 aa		1.16	□□□□□ -2.22

Retrieved 78 of 20,778 RNA–protein pairs in 66.2 ms