RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 UQCR11O14957 56 aa2.24□□□□□ -2.05
CPNE3-208ENST00000614678 LCE1AQ5T7P2 110 aa2.24□□□□□ -2.05
CPNE3-208ENST00000614678 A0A1B0GU69 56 aa2.23□□□□□ -2.05
CPNE3-208ENST00000614678 KRTAP12-2P59991 146 aa2.23□□□□□ -2.05
CPNE3-208ENST00000614678 KRTAP9-9Q9BYP9 154 aa2.22□□□□□ -2.05
CPNE3-208ENST00000614678 KRTAP9-4Q9BYQ2 154 aa2.22□□□□□ -2.05
CPNE3-208ENST00000614678 KRTAP20-1Q3LI63 56 aa2.21□□□□□ -2.06
CPNE3-208ENST00000614678 KRTAP12-1P59990 96 aa2.2□□□□□ -2.06
CPNE3-208ENST00000614678 KRTAP4-12Q9BQ66 201 aa2.2□□□□□ -2.06
CPNE3-208ENST00000614678 KRTAP4-2Q9BYR5 136 aa2.2□□□□□ -2.06
CPNE3-208ENST00000614678 A0A1B0GU33 70 aa2.19□□□□□ -2.06
CPNE3-208ENST00000614678 KRTAP4-7Q9BYR0 210 aa2.19□□□□□ -2.06
CPNE3-208ENST00000614678 KRTAP19-7Q3SYF9 63 aa2.17□□□□□ -2.06
CPNE3-208ENST00000614678 KRTAP5-3Q6L8H2 238 aa2.16□□□□□ -2.06
CPNE3-208ENST00000614678 SPRR2DP22532 72 aa2.15□□□□□ -2.06
CPNE3-208ENST00000614678 KRTAP2-3P0C7H8 128 aa2.14□□□□□ -2.07
CPNE3-208ENST00000614678 KRTAP2-4Q9BYR9 128 aa2.14□□□□□ -2.07
CPNE3-208ENST00000614678 C10orf95Q9H7T3 257 aa2.13□□□□□ -2.07
CPNE3-208ENST00000614678 KRTAP19-5Q3LI72 72 aa2.12□□□□□ -2.07
CPNE3-208ENST00000614678 MT1EP04732 61 aa2.12□□□□□ -2.07
CPNE3-208ENST00000614678 LCE3BQ5TA77 95 aa2.1□□□□□ -2.07
CPNE3-208ENST00000614678 KRTAP4-3Q9BYR4 195 aa2.1□□□□□ -2.07
CPNE3-208ENST00000614678 LCE3AQ5TA76 89 aa2.09□□□□□ -2.07
CPNE3-208ENST00000614678 LCE5AQ5TCM9 118 aa2.08□□□□□ -2.08
CPNE3-208ENST00000614678 KRTAP2-2Q9BYT5 123 aa2.08□□□□□ -2.08
CPNE3-208ENST00000614678 KRTAP2-1Q9BYU5 128 aa2.08□□□□□ -2.08
CPNE3-208ENST00000614678 KRTAP19-3Q7Z4W3 81 aa2.07□□□□□ -2.08
CPNE3-208ENST00000614678 KRTAP4-9Q9BYQ8 210 aa2.05□□□□□ -2.08
CPNE3-208ENST00000614678 MT1LQ93083 61 aa2.03□□□□□ -2.08
CPNE3-208ENST00000614678 MT1MQ8N339 61 aa2.01□□□□□ -2.09
CPNE3-208ENST00000614678 TNP1P09430 55 aa1.99□□□□□ -2.09
CPNE3-208ENST00000614678 MT1GP13640 62 aa1.98□□□□□ -2.09
CPNE3-208ENST00000614678 MT3P25713 68 aa1.98□□□□□ -2.09
CPNE3-208ENST00000614678 HMCN1Q96RW7 5635 aa1.97□□□□□ -2.09
CPNE3-208ENST00000614678 KRTAP12-3P60328 96 aa1.96□□□□□ -2.1
CPNE3-208ENST00000614678 MT4P47944 62 aa1.95□□□□□ -2.1
CPNE3-208ENST00000614678 LCE1DQ5T752 114 aa1.94□□□□□ -2.1
CPNE3-208ENST00000614678 SYNE1Q8NF91 8797 aaKnown RBP1.94□□□□□ -2.1
CPNE3-208ENST00000614678 SPRR5A0A1B0GTR4 108 aa1.93□□□□□ -2.1
CPNE3-208ENST00000614678 LCE4AQ5TA78 99 aa1.91□□□□□ -2.1
CPNE3-208ENST00000614678 PP632Q6XCG6 107 aa1.91□□□□□ -2.1
CPNE3-208ENST00000614678 OBSCNQ5VST9 7968 aa1.88□□□□□ -2.11
CPNE3-208ENST00000614678 GPR98Q8WXG9 6306 aa1.87□□□□□ -2.11
CPNE3-208ENST00000614678 KRTAP5-4Q6L8H1 288 aa1.86□□□□□ -2.11
CPNE3-208ENST00000614678 KRTAP4-11Q9BYQ6 195 aa1.86□□□□□ -2.11
CPNE3-208ENST00000614678 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.84□□□□□ -2.11
CPNE3-208ENST00000614678 KRTAP5-5Q701N2 237 aaPredicted RBP1.84□□□□□ -2.11
CPNE3-208ENST00000614678 KRTAP9-6A8MVA2 160 aa1.83□□□□□ -2.12
CPNE3-208ENST00000614678 AHNAK2Q8IVF2 5795 aa1.82□□□□□ -2.12
CPNE3-208ENST00000614678 LCE3CQ5T5A8 94 aa1.81□□□□□ -2.12
CPNE3-208ENST00000614678 KRTAP20-2Q3LI61 65 aa1.79□□□□□ -2.12
CPNE3-208ENST00000614678 KRTAP6-1Q3LI64 71 aa1.76□□□□□ -2.13
CPNE3-208ENST00000614678 KRTAP5-10Q6L8G5 202 aa1.76□□□□□ -2.13
CPNE3-208ENST00000614678 KRTAP12-4P60329 112 aa1.71□□□□□ -2.14
CPNE3-208ENST00000614678 INE1O15225 51 aa1.71□□□□□ -2.14
CPNE3-208ENST00000614678 MT1AP04731 61 aa1.68□□□□□ -2.14
CPNE3-208ENST00000614678 KRTAP6-2Q3LI66 62 aa1.66□□□□□ -2.14
CPNE3-208ENST00000614678 KRTAP5-2Q701N4 177 aa1.64□□□□□ -2.15
CPNE3-208ENST00000614678 KRTAP5-7Q6L8G8 165 aa1.63□□□□□ -2.15
CPNE3-208ENST00000614678 KRTAP5-8O75690 187 aa1.58□□□□□ -2.16
CPNE3-208ENST00000614678 LCE1FQ5T754 118 aa1.55□□□□□ -2.16
CPNE3-208ENST00000614678 MUC5BQ9HC84 5762 aaPredicted RBP1.54□□□□□ -2.16
CPNE3-208ENST00000614678 LCE3EQ5T5B0 92 aa1.51□□□□□ -2.17
CPNE3-208ENST00000614678 MUC5ACP98088 5654 aa1.51□□□□□ -2.17
CPNE3-208ENST00000614678 KRTAP5-1Q6L8H4 278 aa1.51□□□□□ -2.17
CPNE3-208ENST00000614678 AHNAKQ09666 5890 aaKnown RBP1.43□□□□□ -2.18
CPNE3-208ENST00000614678 MUC19Q7Z5P9 8384 aa1.4□□□□□ -2.19
CPNE3-208ENST00000614678 LCE3DQ9BYE3 92 aa1.4□□□□□ -2.19
CPNE3-208ENST00000614678 LCE1BQ5T7P3 118 aa1.39□□□□□ -2.19
CPNE3-208ENST00000614678 KRTAP5-11Q6L8G4 156 aa1.36□□□□□ -2.19
CPNE3-208ENST00000614678 KRTAP4-4Q9BYR3 166 aa1.35□□□□□ -2.19
CPNE3-208ENST00000614678 LCE1EQ5T753 118 aa1.35□□□□□ -2.19
CPNE3-208ENST00000614678 LCE1CQ5T751 118 aa1.29□□□□□ -2.2
CPNE3-208ENST00000614678 PRM1P04553 51 aa1.16□□□□□ -2.22
CPNE3-208ENST00000614678 KRTAP21-2Q3LI59 83 aa1.15□□□□□ -2.23
CPNE3-208ENST00000614678 PHGR1C9JFL3 82 aa1.02□□□□□ -2.25
CPNE3-208ENST00000614678 KRTAP21-1Q3LI58 79 aa0.85□□□□□ -2.27
CPNE3-208ENST00000614678 MUC16Q8WXI7 14507 aa0.66□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 7.5 ms