RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 KRTAP5-9P26371 169 aa5.15□□□□□ -1.58
USP39-220ENST00000613444 SPRR2FQ96RM1 72 aa5.14□□□□□ -1.59
USP39-220ENST00000613444 MT1LQ93083 61 aa5.09□□□□□ -1.59
USP39-220ENST00000613444 KRTAP6-3Q3LI67 103 aa5.07□□□□□ -1.6
USP39-220ENST00000613444 MDN1Q9NU22 5596 aa5.04□□□□□ -1.6
USP39-220ENST00000613444 KRTAP19-3Q7Z4W3 81 aa5.01□□□□□ -1.61
USP39-220ENST00000613444 LCE3CQ5T5A8 94 aa4.97□□□□□ -1.61
USP39-220ENST00000613444 KRTAP19-4Q3LI73 84 aa4.96□□□□□ -1.62
USP39-220ENST00000613444 LCE1AQ5T7P2 110 aa4.96□□□□□ -1.62
USP39-220ENST00000613444 LCE5AQ5TCM9 118 aa4.96□□□□□ -1.62
USP39-220ENST00000613444 MT1GP13640 62 aa4.95□□□□□ -1.62
USP39-220ENST00000613444 KRTAP4-7Q9BYR0 210 aa4.94□□□□□ -1.62
USP39-220ENST00000613444 SPRR5A0A1B0GTR4 108 aa4.91□□□□□ -1.62
USP39-220ENST00000613444 MT1MQ8N339 61 aa4.91□□□□□ -1.62
USP39-220ENST00000613444 SPRR2EP22531 72 aa4.89□□□□□ -1.63
USP39-220ENST00000613444 SPRR2BP35325 72 aa4.89□□□□□ -1.63
USP39-220ENST00000613444 SPRR2AP35326 72 aa4.89□□□□□ -1.63
USP39-220ENST00000613444 KRTAP20-1Q3LI63 56 aa4.89□□□□□ -1.63
USP39-220ENST00000613444 NEBP20929 6669 aa4.83□□□□□ -1.64
USP39-220ENST00000613444 KRTAP4-3Q9BYR4 195 aa4.82□□□□□ -1.64
USP39-220ENST00000613444 DSTQ03001 7570 aaKnown RBP4.75□□□□□ -1.65
USP39-220ENST00000613444 KRTAP9-6A8MVA2 160 aa4.75□□□□□ -1.65
USP39-220ENST00000613444 SPRR2DP22532 72 aa4.71□□□□□ -1.66
USP39-220ENST00000613444 LOC100996750A0A140TA64 210 aa4.64□□□□□ -1.67
USP39-220ENST00000613444 KRTAP2-3P0C7H8 128 aa4.58□□□□□ -1.68
USP39-220ENST00000613444 KRTAP2-4Q9BYR9 128 aa4.58□□□□□ -1.68
USP39-220ENST00000613444 LCE3BQ5TA77 95 aa4.54□□□□□ -1.68
USP39-220ENST00000613444 GPR98Q8WXG9 6306 aa4.48□□□□□ -1.69
USP39-220ENST00000613444 KRTAP5-5Q701N2 237 aaPredicted RBP4.47□□□□□ -1.69
USP39-220ENST00000613444 INE1O15225 51 aa4.41□□□□□ -1.7
USP39-220ENST00000613444 KRTAP2-2Q9BYT5 123 aa4.37□□□□□ -1.71
USP39-220ENST00000613444 KRTAP2-1Q9BYU5 128 aa4.37□□□□□ -1.71
USP39-220ENST00000613444 MT1AP04731 61 aa4.31□□□□□ -1.72
USP39-220ENST00000613444 KRTAP6-1Q3LI64 71 aa4.3□□□□□ -1.72
USP39-220ENST00000613444 KRTAP5-4Q6L8H1 288 aa4.3□□□□□ -1.72
USP39-220ENST00000613444 SYNE1Q8NF91 8797 aaKnown RBP4.27□□□□□ -1.73
USP39-220ENST00000613444 LCE4AQ5TA78 99 aa4.19□□□□□ -1.74
USP39-220ENST00000613444 KRTAP9-4Q9BYQ2 154 aa4.12□□□□□ -1.75
USP39-220ENST00000613444 MT4P47944 62 aa4.1□□□□□ -1.75
USP39-220ENST00000613444 KRTAP12-4P60329 112 aa4.1□□□□□ -1.75
USP39-220ENST00000613444 KRTAP4-6Q9BYQ5 205 aa4.1□□□□□ -1.75
USP39-220ENST00000613444 KRTAP4-9Q9BYQ8 210 aa4.09□□□□□ -1.75
USP39-220ENST00000613444 LCE1DQ5T752 114 aa4.06□□□□□ -1.76
USP39-220ENST00000613444 HMCN1Q96RW7 5635 aa4.06□□□□□ -1.76
USP39-220ENST00000613444 KRTAP20-2Q3LI61 65 aa4□□□□□ -1.77
USP39-220ENST00000613444 KRTAP6-2Q3LI66 62 aa3.96□□□□□ -1.78
USP39-220ENST00000613444 MT3P25713 68 aa3.89□□□□□ -1.79
USP39-220ENST00000613444 KRTAP5-2Q701N4 177 aa3.89□□□□□ -1.79
USP39-220ENST00000613444 KRTAP5-3Q6L8H2 238 aa3.88□□□□□ -1.79
USP39-220ENST00000613444 KRTAP5-7Q6L8G8 165 aa3.86□□□□□ -1.79
USP39-220ENST00000613444 KRTAP5-10Q6L8G5 202 aa3.82□□□□□ -1.8
USP39-220ENST00000613444 AHNAK2Q8IVF2 5795 aa3.78□□□□□ -1.8
USP39-220ENST00000613444 LCE3DQ9BYE3 92 aa3.7□□□□□ -1.82
USP39-220ENST00000613444 OBSCNQ5VST9 7968 aa3.68□□□□□ -1.82
USP39-220ENST00000613444 LCE3EQ5T5B0 92 aa3.58□□□□□ -1.84
USP39-220ENST00000613444 AHNAKQ09666 5890 aaKnown RBP3.53□□□□□ -1.84
USP39-220ENST00000613444 KRTAP4-11Q9BYQ6 195 aa3.49□□□□□ -1.85
USP39-220ENST00000613444 MUC5BQ9HC84 5762 aaPredicted RBP3.42□□□□□ -1.86
USP39-220ENST00000613444 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
USP39-220ENST00000613444 KRTAP5-1Q6L8H4 278 aa3.38□□□□□ -1.87
USP39-220ENST00000613444 KRTAP5-8O75690 187 aa3.37□□□□□ -1.87
USP39-220ENST00000613444 MUC5ACP98088 5654 aa3.27□□□□□ -1.89
USP39-220ENST00000613444 KRTAP4-2Q9BYR5 136 aa3.22□□□□□ -1.89
USP39-220ENST00000613444 KRTAP9-9Q9BYP9 154 aa3.21□□□□□ -1.9
USP39-220ENST00000613444 LCE1CQ5T751 118 aa3.19□□□□□ -1.9
USP39-220ENST00000613444 LCE1BQ5T7P3 118 aa3.19□□□□□ -1.9
USP39-220ENST00000613444 PRM1P04553 51 aa3.1□□□□□ -1.91
USP39-220ENST00000613444 LCE1FQ5T754 118 aa3.09□□□□□ -1.91
USP39-220ENST00000613444 KRTAP4-12Q9BQ66 201 aa3.05□□□□□ -1.92
USP39-220ENST00000613444 KRTAP5-6Q6L8G9 129 aaPredicted RBP3□□□□□ -1.93
USP39-220ENST00000613444 KRTAP21-2Q3LI59 83 aa2.83□□□□□ -1.96
USP39-220ENST00000613444 KRTAP5-11Q6L8G4 156 aa2.83□□□□□ -1.96
USP39-220ENST00000613444 KRTAP4-4Q9BYR3 166 aa2.5□□□□□ -2.01
USP39-220ENST00000613444 PHGR1C9JFL3 82 aa2.44□□□□□ -2.02
USP39-220ENST00000613444 MUC19Q7Z5P9 8384 aa2.21□□□□□ -2.06
USP39-220ENST00000613444 KRTAP21-1Q3LI58 79 aa1.89□□□□□ -2.11
USP39-220ENST00000613444 MUC16Q8WXI7 14507 aa1.55□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 105.5 ms