RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 C10orf95Q9H7T3 257 aa3.78□□□□□ -1.8
CCDC47-207ENST00000612558 PRAC1Q96KF2 57 aa3.76□□□□□ -1.81
CCDC47-207ENST00000612558 USH2AO75445 5202 aa3.72□□□□□ -1.81
CCDC47-207ENST00000612558 KRTAP25-1Q3LHN0 102 aa3.69□□□□□ -1.82
CCDC47-207ENST00000612558 TNP1P09430 55 aa3.68□□□□□ -1.82
CCDC47-207ENST00000612558 MT1XP80297 61 aa3.68□□□□□ -1.82
CCDC47-207ENST00000612558 PRO2289Q9P1D8 64 aa3.66□□□□□ -1.82
CCDC47-207ENST00000612558 KRTAP10-12P60413 245 aa3.64□□□□□ -1.83
CCDC47-207ENST00000612558 FSIP2Q5CZC0 6907 aa3.59□□□□□ -1.84
CCDC47-207ENST00000612558 PP632Q6XCG6 107 aa3.59□□□□□ -1.84
CCDC47-207ENST00000612558 SSPOA2VEC9 5147 aa3.58□□□□□ -1.84
CCDC47-207ENST00000612558 KRTAP19-6Q3LI70 58 aa3.54□□□□□ -1.84
CCDC47-207ENST00000612558 LCE1FQ5T754 118 aa3.5□□□□□ -1.85
CCDC47-207ENST00000612558 LCE3AQ5TA76 89 aa3.49□□□□□ -1.85
CCDC47-207ENST00000612558 KRTAP4-3Q9BYR4 195 aa3.47□□□□□ -1.85
CCDC47-207ENST00000612558 OBSCNQ5VST9 7968 aa3.45□□□□□ -1.86
CCDC47-207ENST00000612558 FCGBPQ9Y6R7 5405 aaPredicted RBP3.44□□□□□ -1.86
CCDC47-207ENST00000612558 KRTAP8-1Q8IUC2 63 aa3.43□□□□□ -1.86
CCDC47-207ENST00000612558 KMT2DO14686 5537 aa3.42□□□□□ -1.86
CCDC47-207ENST00000612558 KRTAP12-3P60328 96 aa3.36□□□□□ -1.87
CCDC47-207ENST00000612558 CRCT1Q9UGL9 99 aa3.36□□□□□ -1.87
CCDC47-207ENST00000612558 LCE3CQ5T5A8 94 aa3.34□□□□□ -1.87
CCDC47-207ENST00000612558 MACF1Q9UPN3 7388 aaKnown RBP3.34□□□□□ -1.87
CCDC47-207ENST00000612558 KRTAP19-5Q3LI72 72 aa3.33□□□□□ -1.88
CCDC47-207ENST00000612558 KRTAP19-7Q3SYF9 63 aa3.28□□□□□ -1.88
CCDC47-207ENST00000612558 KRTAP5-2Q701N4 177 aa3.26□□□□□ -1.89
CCDC47-207ENST00000612558 SYNE2Q8WXH0 6885 aaKnown RBP3.25□□□□□ -1.89
CCDC47-207ENST00000612558 LUZP6Q538Z0 58 aa3.25□□□□□ -1.89
CCDC47-207ENST00000612558 MT1EP04732 61 aa3.22□□□□□ -1.89
CCDC47-207ENST00000612558 SPRR5A0A1B0GTR4 108 aa3.17□□□□□ -1.9
CCDC47-207ENST00000612558 MT1LQ93083 61 aa3.16□□□□□ -1.9
CCDC47-207ENST00000612558 MUC12Q9UKN1 5478 aa3.15□□□□□ -1.9
CCDC47-207ENST00000612558 SPRR2FQ96RM1 72 aa3.14□□□□□ -1.91
CCDC47-207ENST00000612558 KRTAP19-3Q7Z4W3 81 aa3.1□□□□□ -1.91
CCDC47-207ENST00000612558 MT1GP13640 62 aa3.08□□□□□ -1.92
CCDC47-207ENST00000612558 MDN1Q9NU22 5596 aa3.06□□□□□ -1.92
CCDC47-207ENST00000612558 KRTAP6-3Q3LI67 103 aa3.05□□□□□ -1.92
CCDC47-207ENST00000612558 MT1MQ8N339 61 aa3.04□□□□□ -1.92
CCDC47-207ENST00000612558 NDUFAF8A1L188 74 aa3.03□□□□□ -1.92
CCDC47-207ENST00000612558 LCE3EQ5T5B0 92 aa3.03□□□□□ -1.92
CCDC47-207ENST00000612558 DSTQ03001 7570 aaKnown RBP2.99□□□□□ -1.93
CCDC47-207ENST00000612558 SPRR2EP22531 72 aa2.98□□□□□ -1.93
CCDC47-207ENST00000612558 SPRR2BP35325 72 aa2.98□□□□□ -1.93
CCDC47-207ENST00000612558 SPRR2AP35326 72 aa2.98□□□□□ -1.93
CCDC47-207ENST00000612558 NEBP20929 6669 aa2.95□□□□□ -1.94
CCDC47-207ENST00000612558 KRTAP5-5Q701N2 237 aaPredicted RBP2.94□□□□□ -1.94
CCDC47-207ENST00000612558 LCE1CQ5T751 118 aa2.89□□□□□ -1.95
CCDC47-207ENST00000612558 LCE1BQ5T7P3 118 aa2.89□□□□□ -1.95
CCDC47-207ENST00000612558 SPRR2DP22532 72 aa2.87□□□□□ -1.95
CCDC47-207ENST00000612558 KRTAP5-8O75690 187 aa2.78□□□□□ -1.96
CCDC47-207ENST00000612558 KRTAP2-3P0C7H8 128 aa2.76□□□□□ -1.97
CCDC47-207ENST00000612558 KRTAP2-4Q9BYR9 128 aa2.76□□□□□ -1.97
CCDC47-207ENST00000612558 KRTAP2-1Q9BYU5 128 aa2.76□□□□□ -1.97
CCDC47-207ENST00000612558 MT1AP04731 61 aa2.69□□□□□ -1.98
CCDC47-207ENST00000612558 SYNE1Q8NF91 8797 aaKnown RBP2.68□□□□□ -1.98
CCDC47-207ENST00000612558 KRTAP6-1Q3LI64 71 aa2.66□□□□□ -1.98
CCDC47-207ENST00000612558 HMCN1Q96RW7 5635 aa2.64□□□□□ -1.99
CCDC47-207ENST00000612558 INE1O15225 51 aa2.63□□□□□ -1.99
CCDC47-207ENST00000612558 KRTAP20-1Q3LI63 56 aa2.59□□□□□ -1.99
CCDC47-207ENST00000612558 KRTAP12-4P60329 112 aa2.55□□□□□ -2
CCDC47-207ENST00000612558 MT4P47944 62 aa2.49□□□□□ -2.01
CCDC47-207ENST00000612558 KRTAP6-2Q3LI66 62 aa2.44□□□□□ -2.02
CCDC47-207ENST00000612558 KRTAP20-2Q3LI61 65 aa2.43□□□□□ -2.02
CCDC47-207ENST00000612558 LCE3DQ9BYE3 92 aa2.37□□□□□ -2.03
CCDC47-207ENST00000612558 MUC19Q7Z5P9 8384 aa2.32□□□□□ -2.04
CCDC47-207ENST00000612558 KRTAP5-7Q6L8G8 165 aa2.3□□□□□ -2.04
CCDC47-207ENST00000612558 AHNAK2Q8IVF2 5795 aa2.2□□□□□ -2.06
CCDC47-207ENST00000612558 KRTAP21-2Q3LI59 83 aa2.05□□□□□ -2.08
CCDC47-207ENST00000612558 MUC5ACP98088 5654 aa2.03□□□□□ -2.09
CCDC47-207ENST00000612558 PRM1P04553 51 aa2.01□□□□□ -2.09
CCDC47-207ENST00000612558 KRTAP5-10Q6L8G5 202 aa2.01□□□□□ -2.09
CCDC47-207ENST00000612558 GPR98Q8WXG9 6306 aa2□□□□□ -2.09
CCDC47-207ENST00000612558 MUC5BQ9HC84 5762 aaPredicted RBP1.78□□□□□ -2.12
CCDC47-207ENST00000612558 AHNAKQ09666 5890 aaKnown RBP1.69□□□□□ -2.14
CCDC47-207ENST00000612558 PHGR1C9JFL3 82 aa1.5□□□□□ -2.17
CCDC47-207ENST00000612558 KRTAP21-1Q3LI58 79 aa1.24□□□□□ -2.21
CCDC47-207ENST00000612558 MUC16Q8WXI7 14507 aa1.01□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 468.7 ms