RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 LCE1AQ5T7P2 110 aa6.28□□□□□ -1.4
CCDC28A-202ENST00000611852 TNP1P09430 55 aa6.25□□□□□ -1.41
CCDC28A-202ENST00000611852 KRTAP25-1Q3LHN0 102 aa6.25□□□□□ -1.41
CCDC28A-202ENST00000611852 KRTAP19-7Q3SYF9 63 aa6.21□□□□□ -1.42
CCDC28A-202ENST00000611852 KRTAP20-1Q3LI63 56 aa6.15□□□□□ -1.43
CCDC28A-202ENST00000611852 MT1EP04732 61 aa6.14□□□□□ -1.43
CCDC28A-202ENST00000611852 KRTAP4-7Q9BYR0 210 aa6.14□□□□□ -1.43
CCDC28A-202ENST00000611852 LCE3AQ5TA76 89 aa6.13□□□□□ -1.43
CCDC28A-202ENST00000611852 KRTAP19-5Q3LI72 72 aa6.12□□□□□ -1.43
CCDC28A-202ENST00000611852 SPRR2DP22532 72 aa6.09□□□□□ -1.43
CCDC28A-202ENST00000611852 KRTAP2-3P0C7H8 128 aa6.07□□□□□ -1.44
CCDC28A-202ENST00000611852 KRTAP2-4Q9BYR9 128 aa6.07□□□□□ -1.44
CCDC28A-202ENST00000611852 PP632Q6XCG6 107 aa6.05□□□□□ -1.44
CCDC28A-202ENST00000611852 LCE1DQ5T752 114 aa6.03□□□□□ -1.44
CCDC28A-202ENST00000611852 KRTAP23-1A1A580 65 aa6.02□□□□□ -1.45
CCDC28A-202ENST00000611852 KRTAP19-3Q7Z4W3 81 aa6.02□□□□□ -1.45
CCDC28A-202ENST00000611852 LCE5AQ5TCM9 118 aa6□□□□□ -1.45
CCDC28A-202ENST00000611852 MT1LQ93083 61 aa5.92□□□□□ -1.46
CCDC28A-202ENST00000611852 MT1GP13640 62 aa5.91□□□□□ -1.46
CCDC28A-202ENST00000611852 KRTAP4-9Q9BYQ8 210 aa5.9□□□□□ -1.46
CCDC28A-202ENST00000611852 KRTAP12-3P60328 96 aa5.89□□□□□ -1.47
CCDC28A-202ENST00000611852 KRTAP2-2Q9BYT5 123 aa5.89□□□□□ -1.47
CCDC28A-202ENST00000611852 KRTAP2-1Q9BYU5 128 aa5.89□□□□□ -1.47
CCDC28A-202ENST00000611852 KRTAP4-2Q9BYR5 136 aa5.87□□□□□ -1.47
CCDC28A-202ENST00000611852 MT1MQ8N339 61 aa5.82□□□□□ -1.48
CCDC28A-202ENST00000611852 DSTQ03001 7570 aaKnown RBP5.77□□□□□ -1.49
CCDC28A-202ENST00000611852 KRTAP4-3Q9BYR4 195 aa5.68□□□□□ -1.5
CCDC28A-202ENST00000611852 KRTAP4-11Q9BYQ6 195 aa5.62□□□□□ -1.51
CCDC28A-202ENST00000611852 KRTAP15-1Q3LI76 137 aa5.61□□□□□ -1.51
CCDC28A-202ENST00000611852 KRTAP19-4Q3LI73 84 aa5.57□□□□□ -1.52
CCDC28A-202ENST00000611852 KRTAP5-3Q6L8H2 238 aa5.55□□□□□ -1.52
CCDC28A-202ENST00000611852 LCE3CQ5T5A8 94 aa5.46□□□□□ -1.54
CCDC28A-202ENST00000611852 LCE4AQ5TA78 99 aa5.41□□□□□ -1.54
CCDC28A-202ENST00000611852 KRTAP5-4Q6L8H1 288 aa5.38□□□□□ -1.55
CCDC28A-202ENST00000611852 KRTAP5-5Q701N2 237 aaPredicted RBP5.32□□□□□ -1.56
CCDC28A-202ENST00000611852 SPRR5A0A1B0GTR4 108 aa5.31□□□□□ -1.56
CCDC28A-202ENST00000611852 MT4P47944 62 aa5.31□□□□□ -1.56
CCDC28A-202ENST00000611852 H3BS24 57 aa5.24□□□□□ -1.57
CCDC28A-202ENST00000611852 HMCN1Q96RW7 5635 aa5.21□□□□□ -1.58
CCDC28A-202ENST00000611852 LUZP6Q538Z0 58 aa5.21□□□□□ -1.58
CCDC28A-202ENST00000611852 KRTAP9-6A8MVA2 160 aa5.17□□□□□ -1.58
CCDC28A-202ENST00000611852 KRTAP12-4P60329 112 aa5.08□□□□□ -1.6
CCDC28A-202ENST00000611852 KRTAP20-2Q3LI61 65 aa5.05□□□□□ -1.6
CCDC28A-202ENST00000611852 MT1AP04731 61 aa5.03□□□□□ -1.6
CCDC28A-202ENST00000611852 NDUFAF8A1L188 74 aa5.02□□□□□ -1.61
CCDC28A-202ENST00000611852 SYNE1Q8NF91 8797 aaKnown RBP5.02□□□□□ -1.61
CCDC28A-202ENST00000611852 KRTAP6-1Q3LI64 71 aa4.98□□□□□ -1.61
CCDC28A-202ENST00000611852 GPR98Q8WXG9 6306 aa4.92□□□□□ -1.62
CCDC28A-202ENST00000611852 AHNAK2Q8IVF2 5795 aa4.88□□□□□ -1.63
CCDC28A-202ENST00000611852 KRTAP5-10Q6L8G5 202 aa4.81□□□□□ -1.64
CCDC28A-202ENST00000611852 KRTAP5-2Q701N4 177 aa4.77□□□□□ -1.65
CCDC28A-202ENST00000611852 KRTAP6-2Q3LI66 62 aa4.71□□□□□ -1.66
CCDC28A-202ENST00000611852 MT3P25713 68 aa4.59□□□□□ -1.67
CCDC28A-202ENST00000611852 KRTAP5-7Q6L8G8 165 aa4.57□□□□□ -1.68
CCDC28A-202ENST00000611852 A0A0A0MQY5 61 aa4.56□□□□□ -1.68
CCDC28A-202ENST00000611852 OBSCNQ5VST9 7968 aa4.42□□□□□ -1.7
CCDC28A-202ENST00000611852 KRTAP5-8O75690 187 aa4.39□□□□□ -1.71
CCDC28A-202ENST00000611852 KRTAP5-1Q6L8H4 278 aa4.22□□□□□ -1.73
CCDC28A-202ENST00000611852 INE1O15225 51 aa4.17□□□□□ -1.74
CCDC28A-202ENST00000611852 LCE1EQ5T753 118 aa4.15□□□□□ -1.75
CCDC28A-202ENST00000611852 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.06□□□□□ -1.76
CCDC28A-202ENST00000611852 MUC5ACP98088 5654 aa4.06□□□□□ -1.76
CCDC28A-202ENST00000611852 LCE3DQ9BYE3 92 aa4□□□□□ -1.77
CCDC28A-202ENST00000611852 MUC5BQ9HC84 5762 aaPredicted RBP3.99□□□□□ -1.77
CCDC28A-202ENST00000611852 AHNAKQ09666 5890 aaKnown RBP3.91□□□□□ -1.78
CCDC28A-202ENST00000611852 LCE3EQ5T5B0 92 aa3.88□□□□□ -1.79
CCDC28A-202ENST00000611852 LCE1BQ5T7P3 118 aa3.87□□□□□ -1.79
CCDC28A-202ENST00000611852 LCE1CQ5T751 118 aa3.85□□□□□ -1.79
CCDC28A-202ENST00000611852 KRTAP5-11Q6L8G4 156 aa3.77□□□□□ -1.81
CCDC28A-202ENST00000611852 PRM1P04553 51 aa3.38□□□□□ -1.87
CCDC28A-202ENST00000611852 KRTAP4-4Q9BYR3 166 aa3.38□□□□□ -1.87
CCDC28A-202ENST00000611852 KRTAP21-2Q3LI59 83 aa3.29□□□□□ -1.88
CCDC28A-202ENST00000611852 LCE1FQ5T754 118 aa3.29□□□□□ -1.88
CCDC28A-202ENST00000611852 PHGR1C9JFL3 82 aa2.98□□□□□ -1.93
CCDC28A-202ENST00000611852 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
CCDC28A-202ENST00000611852 KRTAP21-1Q3LI58 79 aa2.1□□□□□ -2.07
CCDC28A-202ENST00000611852 MUC16Q8WXI7 14507 aa1.85□□□□□ -2.11
Retrieved 77 of 20,778 RNA–protein pairs in 77.1 ms