RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SPRR2AP35326 72 aa5.21□□□□□ -1.58
UPF1-211ENST00000600868 KRTAP19-3Q7Z4W3 81 aa5.16□□□□□ -1.58
UPF1-211ENST00000600868 MDN1Q9NU22 5596 aa5.14□□□□□ -1.59
UPF1-211ENST00000600868 MT1LQ93083 61 aa5.14□□□□□ -1.59
UPF1-211ENST00000600868 LCE5AQ5TCM9 118 aa5.11□□□□□ -1.59
UPF1-211ENST00000600868 MT1GP13640 62 aa5.09□□□□□ -1.59
UPF1-211ENST00000600868 KRTAP15-1Q3LI76 137 aa5.07□□□□□ -1.6
UPF1-211ENST00000600868 KTN1-AS1Q86SY8 53 aa5.06□□□□□ -1.6
UPF1-211ENST00000600868 PRAC1Q96KF2 57 aa5.06□□□□□ -1.6
UPF1-211ENST00000600868 KRTAP20-1Q3LI63 56 aa5.05□□□□□ -1.6
UPF1-211ENST00000600868 SPRR2DP22532 72 aa5.03□□□□□ -1.6
UPF1-211ENST00000600868 KRTAP19-4Q3LI73 84 aa5.02□□□□□ -1.61
UPF1-211ENST00000600868 MT1MQ8N339 61 aa5□□□□□ -1.61
UPF1-211ENST00000600868 KRTAP2-3P0C7H8 128 aa4.9□□□□□ -1.63
UPF1-211ENST00000600868 KRTAP2-4Q9BYR9 128 aa4.9□□□□□ -1.63
UPF1-211ENST00000600868 LCE3CQ5T5A8 94 aa4.88□□□□□ -1.63
UPF1-211ENST00000600868 KRTAP4-7Q9BYR0 210 aa4.88□□□□□ -1.63
UPF1-211ENST00000600868 LCE3BQ5TA77 95 aa4.87□□□□□ -1.63
UPF1-211ENST00000600868 KRTAP4-3Q9BYR4 195 aa4.84□□□□□ -1.63
UPF1-211ENST00000600868 KRTAP2-2Q9BYT5 123 aa4.78□□□□□ -1.64
UPF1-211ENST00000600868 KRTAP2-1Q9BYU5 128 aa4.78□□□□□ -1.64
UPF1-211ENST00000600868 SVIPQ8NHG7 77 aa4.76□□□□□ -1.65
UPF1-211ENST00000600868 DSTQ03001 7570 aaKnown RBP4.69□□□□□ -1.66
UPF1-211ENST00000600868 LOC100996750A0A140TA64 210 aa4.6□□□□□ -1.67
UPF1-211ENST00000600868 GPR98Q8WXG9 6306 aa4.6□□□□□ -1.67
UPF1-211ENST00000600868 KRTAP9-6A8MVA2 160 aa4.59□□□□□ -1.67
UPF1-211ENST00000600868 SPRR5A0A1B0GTR4 108 aa4.55□□□□□ -1.68
UPF1-211ENST00000600868 KRTAP5-5Q701N2 237 aaPredicted RBP4.55□□□□□ -1.68
UPF1-211ENST00000600868 KRTAP5-4Q6L8H1 288 aa4.51□□□□□ -1.69
UPF1-211ENST00000600868 LCE4AQ5TA78 99 aa4.5□□□□□ -1.69
UPF1-211ENST00000600868 KRTAP4-9Q9BYQ8 210 aa4.39□□□□□ -1.71
UPF1-211ENST00000600868 MT1AP04731 61 aa4.37□□□□□ -1.71
UPF1-211ENST00000600868 MT4P47944 62 aa4.36□□□□□ -1.71
UPF1-211ENST00000600868 LCE1DQ5T752 114 aa4.36□□□□□ -1.71
UPF1-211ENST00000600868 KRTAP6-1Q3LI64 71 aa4.32□□□□□ -1.72
UPF1-211ENST00000600868 KRTAP12-4P60329 112 aa4.31□□□□□ -1.72
UPF1-211ENST00000600868 KRTAP4-6Q9BYQ5 205 aa4.3□□□□□ -1.72
UPF1-211ENST00000600868 SYNE1Q8NF91 8797 aaKnown RBP4.27□□□□□ -1.73
UPF1-211ENST00000600868 KRTAP20-2Q3LI61 65 aa4.22□□□□□ -1.73
UPF1-211ENST00000600868 LUZP6Q538Z0 58 aa4.21□□□□□ -1.74
UPF1-211ENST00000600868 HMCN1Q96RW7 5635 aa4.2□□□□□ -1.74
UPF1-211ENST00000600868 KRTAP9-4Q9BYQ2 154 aa4.19□□□□□ -1.74
UPF1-211ENST00000600868 AHNAK2Q8IVF2 5795 aa4.14□□□□□ -1.75
UPF1-211ENST00000600868 KRTAP5-3Q6L8H2 238 aa4.08□□□□□ -1.76
UPF1-211ENST00000600868 KRTAP5-2Q701N4 177 aa4.04□□□□□ -1.76
UPF1-211ENST00000600868 KRTAP6-2Q3LI66 62 aa4.03□□□□□ -1.76
UPF1-211ENST00000600868 MT3P25713 68 aa3.98□□□□□ -1.77
UPF1-211ENST00000600868 KRTAP5-10Q6L8G5 202 aa3.96□□□□□ -1.78
UPF1-211ENST00000600868 KRTAP5-7Q6L8G8 165 aa3.86□□□□□ -1.79
UPF1-211ENST00000600868 NDUFAF8A1L188 74 aa3.84□□□□□ -1.79
UPF1-211ENST00000600868 KRTAP4-11Q9BYQ6 195 aa3.74□□□□□ -1.81
UPF1-211ENST00000600868 LCE3DQ9BYE3 92 aa3.61□□□□□ -1.83
UPF1-211ENST00000600868 KRTAP5-8O75690 187 aa3.6□□□□□ -1.83
UPF1-211ENST00000600868 LCE1EQ5T753 118 aa3.56□□□□□ -1.84
UPF1-211ENST00000600868 AHNAKQ09666 5890 aaKnown RBP3.55□□□□□ -1.84
UPF1-211ENST00000600868 OBSCNQ5VST9 7968 aa3.53□□□□□ -1.84
UPF1-211ENST00000600868 KRTAP5-1Q6L8H4 278 aa3.53□□□□□ -1.84
UPF1-211ENST00000600868 LCE3EQ5T5B0 92 aa3.48□□□□□ -1.85
UPF1-211ENST00000600868 MUC5ACP98088 5654 aa3.47□□□□□ -1.85
UPF1-211ENST00000600868 MUC5BQ9HC84 5762 aaPredicted RBP3.47□□□□□ -1.85
UPF1-211ENST00000600868 KRTAP9-9Q9BYP9 154 aa3.33□□□□□ -1.88
UPF1-211ENST00000600868 KRTAP4-2Q9BYR5 136 aa3.31□□□□□ -1.88
UPF1-211ENST00000600868 A0A0A0MQY5 61 aa3.3□□□□□ -1.88
UPF1-211ENST00000600868 LCE1CQ5T751 118 aa3.3□□□□□ -1.88
UPF1-211ENST00000600868 LCE1BQ5T7P3 118 aa3.3□□□□□ -1.88
UPF1-211ENST00000600868 INE1O15225 51 aa3.19□□□□□ -1.9
UPF1-211ENST00000600868 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.07□□□□□ -1.92
UPF1-211ENST00000600868 KRTAP5-11Q6L8G4 156 aa2.94□□□□□ -1.94
UPF1-211ENST00000600868 PRM1P04553 51 aa2.86□□□□□ -1.95
UPF1-211ENST00000600868 KRTAP21-2Q3LI59 83 aa2.85□□□□□ -1.95
UPF1-211ENST00000600868 KRTAP4-12Q9BQ66 201 aa2.8□□□□□ -1.96
UPF1-211ENST00000600868 LCE1FQ5T754 118 aa2.76□□□□□ -1.97
UPF1-211ENST00000600868 H3BS24 57 aa2.74□□□□□ -1.97
UPF1-211ENST00000600868 PHGR1C9JFL3 82 aa2.53□□□□□ -2
UPF1-211ENST00000600868 KRTAP4-4Q9BYR3 166 aa2.51□□□□□ -2.01
UPF1-211ENST00000600868 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
UPF1-211ENST00000600868 KRTAP21-1Q3LI58 79 aa1.78□□□□□ -2.12
UPF1-211ENST00000600868 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 51.6 ms