RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 KRTAP20-1Q3LI63 56 aa6□□□□□ -1.45
SHKBP1-219ENST00000599575 KRTAP2-3P0C7H8 128 aa5.99□□□□□ -1.45
SHKBP1-219ENST00000599575 LCE5AQ5TCM9 118 aa5.99□□□□□ -1.45
SHKBP1-219ENST00000599575 KRTAP2-4Q9BYR9 128 aa5.99□□□□□ -1.45
SHKBP1-219ENST00000599575 KRTAP12-3P60328 96 aa5.98□□□□□ -1.45
SHKBP1-219ENST00000599575 MT1GP13640 62 aa5.96□□□□□ -1.46
SHKBP1-219ENST00000599575 PP632Q6XCG6 107 aa5.95□□□□□ -1.46
SHKBP1-219ENST00000599575 MT1LQ93083 61 aa5.91□□□□□ -1.46
SHKBP1-219ENST00000599575 KRTAP19-4Q3LI73 84 aa5.85□□□□□ -1.47
SHKBP1-219ENST00000599575 LCE3BQ5TA77 95 aa5.82□□□□□ -1.48
SHKBP1-219ENST00000599575 KRTAP2-2Q9BYT5 123 aa5.82□□□□□ -1.48
SHKBP1-219ENST00000599575 KRTAP2-1Q9BYU5 128 aa5.82□□□□□ -1.48
SHKBP1-219ENST00000599575 MT1MQ8N339 61 aa5.8□□□□□ -1.48
SHKBP1-219ENST00000599575 KRTAP15-1Q3LI76 137 aa5.73□□□□□ -1.49
SHKBP1-219ENST00000599575 DSTQ03001 7570 aaKnown RBP5.72□□□□□ -1.49
SHKBP1-219ENST00000599575 PMAIP1Q13794 54 aa5.7□□□□□ -1.5
SHKBP1-219ENST00000599575 PRO0628Q9UI54 55 aa5.63□□□□□ -1.51
SHKBP1-219ENST00000599575 KRTAP4-7Q9BYR0 210 aa5.55□□□□□ -1.52
SHKBP1-219ENST00000599575 KRTAP4-3Q9BYR4 195 aa5.55□□□□□ -1.52
SHKBP1-219ENST00000599575 LCE3CQ5T5A8 94 aa5.54□□□□□ -1.52
SHKBP1-219ENST00000599575 LCE4AQ5TA78 99 aa5.4□□□□□ -1.54
SHKBP1-219ENST00000599575 GPR98Q8WXG9 6306 aa5.39□□□□□ -1.55
SHKBP1-219ENST00000599575 KRTAP5-4Q6L8H1 288 aa5.35□□□□□ -1.55
SHKBP1-219ENST00000599575 KRTAP5-5Q701N2 237 aaPredicted RBP5.3□□□□□ -1.56
SHKBP1-219ENST00000599575 PRAC1Q96KF2 57 aa5.29□□□□□ -1.56
SHKBP1-219ENST00000599575 KTN1-AS1Q86SY8 53 aa5.28□□□□□ -1.56
SHKBP1-219ENST00000599575 LOC100996750A0A140TA64 210 aa5.24□□□□□ -1.57
SHKBP1-219ENST00000599575 KRTAP4-9Q9BYQ8 210 aa5.24□□□□□ -1.57
SHKBP1-219ENST00000599575 LCE1DQ5T752 114 aa5.22□□□□□ -1.57
SHKBP1-219ENST00000599575 HMCN1Q96RW7 5635 aa5.18□□□□□ -1.58
SHKBP1-219ENST00000599575 MT4P47944 62 aa5.18□□□□□ -1.58
SHKBP1-219ENST00000599575 KRTAP9-6A8MVA2 160 aa5.14□□□□□ -1.59
SHKBP1-219ENST00000599575 KRTAP12-4P60329 112 aa5.12□□□□□ -1.59
SHKBP1-219ENST00000599575 SPRR5A0A1B0GTR4 108 aa5.09□□□□□ -1.59
SHKBP1-219ENST00000599575 KRTAP4-6Q9BYQ5 205 aa5.08□□□□□ -1.6
SHKBP1-219ENST00000599575 MT1AP04731 61 aa5.06□□□□□ -1.6
SHKBP1-219ENST00000599575 SYNE1Q8NF91 8797 aaKnown RBP5.01□□□□□ -1.61
SHKBP1-219ENST00000599575 KRTAP20-2Q3LI61 65 aa4.99□□□□□ -1.61
SHKBP1-219ENST00000599575 SVIPQ8NHG7 77 aa4.96□□□□□ -1.62
SHKBP1-219ENST00000599575 KRTAP6-1Q3LI64 71 aa4.95□□□□□ -1.62
SHKBP1-219ENST00000599575 KRTAP9-4Q9BYQ2 154 aa4.85□□□□□ -1.63
SHKBP1-219ENST00000599575 KRTAP5-3Q6L8H2 238 aa4.84□□□□□ -1.63
SHKBP1-219ENST00000599575 AHNAK2Q8IVF2 5795 aa4.78□□□□□ -1.64
SHKBP1-219ENST00000599575 KRTAP5-2Q701N4 177 aa4.75□□□□□ -1.65
SHKBP1-219ENST00000599575 KRTAP5-10Q6L8G5 202 aa4.68□□□□□ -1.66
SHKBP1-219ENST00000599575 KRTAP6-2Q3LI66 62 aa4.67□□□□□ -1.66
SHKBP1-219ENST00000599575 MT3P25713 68 aa4.64□□□□□ -1.67
SHKBP1-219ENST00000599575 LUZP6Q538Z0 58 aa4.57□□□□□ -1.68
SHKBP1-219ENST00000599575 KRTAP5-7Q6L8G8 165 aa4.48□□□□□ -1.69
SHKBP1-219ENST00000599575 KRTAP4-11Q9BYQ6 195 aa4.48□□□□□ -1.69
SHKBP1-219ENST00000599575 OBSCNQ5VST9 7968 aa4.38□□□□□ -1.71
SHKBP1-219ENST00000599575 KRTAP5-8O75690 187 aa4.31□□□□□ -1.72
SHKBP1-219ENST00000599575 LCE1EQ5T753 118 aa4.22□□□□□ -1.73
SHKBP1-219ENST00000599575 KRTAP5-1Q6L8H4 278 aa4.17□□□□□ -1.74
SHKBP1-219ENST00000599575 AHNAKQ09666 5890 aaKnown RBP4.1□□□□□ -1.75
SHKBP1-219ENST00000599575 LCE3DQ9BYE3 92 aa4.09□□□□□ -1.75
SHKBP1-219ENST00000599575 MUC5ACP98088 5654 aa4.06□□□□□ -1.76
SHKBP1-219ENST00000599575 KRTAP9-9Q9BYP9 154 aa4.05□□□□□ -1.76
SHKBP1-219ENST00000599575 MUC5BQ9HC84 5762 aaPredicted RBP3.95□□□□□ -1.78
SHKBP1-219ENST00000599575 NDUFAF8A1L188 74 aa3.93□□□□□ -1.78
SHKBP1-219ENST00000599575 LCE3EQ5T5B0 92 aa3.91□□□□□ -1.78
SHKBP1-219ENST00000599575 LCE1CQ5T751 118 aa3.89□□□□□ -1.79
SHKBP1-219ENST00000599575 LCE1BQ5T7P3 118 aa3.89□□□□□ -1.79
SHKBP1-219ENST00000599575 KRTAP4-2Q9BYR5 136 aa3.85□□□□□ -1.79
SHKBP1-219ENST00000599575 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.6□□□□□ -1.83
SHKBP1-219ENST00000599575 KRTAP5-11Q6L8G4 156 aa3.48□□□□□ -1.85
SHKBP1-219ENST00000599575 A0A0A0MQY5 61 aa3.4□□□□□ -1.87
SHKBP1-219ENST00000599575 LCE1FQ5T754 118 aa3.35□□□□□ -1.87
SHKBP1-219ENST00000599575 INE1O15225 51 aa3.34□□□□□ -1.87
SHKBP1-219ENST00000599575 KRTAP21-2Q3LI59 83 aa3.28□□□□□ -1.88
SHKBP1-219ENST00000599575 KRTAP4-12Q9BQ66 201 aa3.28□□□□□ -1.88
SHKBP1-219ENST00000599575 H3BS24 57 aa3.25□□□□□ -1.89
SHKBP1-219ENST00000599575 PRM1P04553 51 aa3.09□□□□□ -1.91
SHKBP1-219ENST00000599575 PHGR1C9JFL3 82 aa2.98□□□□□ -1.93
SHKBP1-219ENST00000599575 KRTAP4-4Q9BYR3 166 aa2.86□□□□□ -1.95
SHKBP1-219ENST00000599575 MUC19Q7Z5P9 8384 aa2.65□□□□□ -1.98
SHKBP1-219ENST00000599575 KRTAP21-1Q3LI58 79 aa2.09□□□□□ -2.07
SHKBP1-219ENST00000599575 MUC16Q8WXI7 14507 aa1.87□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 120.8 ms