RNA–Protein interactions for RNA: ENST00000596445.5

VRK3-211, Transcript of vaccinia related kinase 3, humanhuman

TSL 5

Gene VRK3, Length 840 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-211ENST00000596445 MT1EP04732 61 aa3.09□□□□□ -1.91
VRK3-211ENST00000596445 ROMO1P60602 79 aa3.07□□□□□ -1.92
VRK3-211ENST00000596445 KRTAP23-1A1A580 65 aa3.03□□□□□ -1.92
VRK3-211ENST00000596445 SPRR2DP22532 72 aa3.03□□□□□ -1.92
VRK3-211ENST00000596445 KRTAP20-1Q3LI63 56 aa3.02□□□□□ -1.93
VRK3-211ENST00000596445 KRTAP19-3Q7Z4W3 81 aa3.02□□□□□ -1.93
VRK3-211ENST00000596445 KRTAP12-3P60328 96 aa3.01□□□□□ -1.93
VRK3-211ENST00000596445 LCE5AQ5TCM9 118 aa3.01□□□□□ -1.93
VRK3-211ENST00000596445 KRTAP2-3P0C7H8 128 aa3□□□□□ -1.93
VRK3-211ENST00000596445 KRTAP2-4Q9BYR9 128 aa3□□□□□ -1.93
VRK3-211ENST00000596445 MT1GP13640 62 aa2.99□□□□□ -1.93
VRK3-211ENST00000596445 PRAC1Q96KF2 57 aa2.99□□□□□ -1.93
VRK3-211ENST00000596445 MT1LQ93083 61 aa2.98□□□□□ -1.93
VRK3-211ENST00000596445 PP632Q6XCG6 107 aa2.96□□□□□ -1.94
VRK3-211ENST00000596445 LCE3BQ5TA77 95 aa2.94□□□□□ -1.94
VRK3-211ENST00000596445 MT1MQ8N339 61 aa2.93□□□□□ -1.94
VRK3-211ENST00000596445 KRTAP2-2Q9BYT5 123 aa2.91□□□□□ -1.94
VRK3-211ENST00000596445 KRTAP2-1Q9BYU5 128 aa2.91□□□□□ -1.94
VRK3-211ENST00000596445 KRTAP19-4Q3LI73 84 aa2.88□□□□□ -1.95
VRK3-211ENST00000596445 KRTAP15-1Q3LI76 137 aa2.88□□□□□ -1.95
VRK3-211ENST00000596445 DSTQ03001 7570 aaKnown RBP2.85□□□□□ -1.95
VRK3-211ENST00000596445 KRTAP4-7Q9BYR0 210 aa2.84□□□□□ -1.95
VRK3-211ENST00000596445 KRTAP4-3Q9BYR4 195 aa2.84□□□□□ -1.95
VRK3-211ENST00000596445 GPR98Q8WXG9 6306 aa2.83□□□□□ -1.96
VRK3-211ENST00000596445 LCE3CQ5T5A8 94 aa2.8□□□□□ -1.96
VRK3-211ENST00000596445 LOC100996750A0A140TA64 210 aa2.75□□□□□ -1.97
VRK3-211ENST00000596445 KRTAP4-6Q9BYQ5 205 aa2.75□□□□□ -1.97
VRK3-211ENST00000596445 A0A0A0MQY5 61 aa2.7□□□□□ -1.98
VRK3-211ENST00000596445 LCE4AQ5TA78 99 aa2.7□□□□□ -1.98
VRK3-211ENST00000596445 KRTAP5-4Q6L8H1 288 aa2.68□□□□□ -1.98
VRK3-211ENST00000596445 KRTAP5-5Q701N2 237 aaPredicted RBP2.67□□□□□ -1.98
VRK3-211ENST00000596445 KRTAP4-9Q9BYQ8 210 aa2.67□□□□□ -1.98
VRK3-211ENST00000596445 NDUFAF8A1L188 74 aa2.65□□□□□ -1.99
VRK3-211ENST00000596445 LCE1DQ5T752 114 aa2.64□□□□□ -1.99
VRK3-211ENST00000596445 KRTAP9-6A8MVA2 160 aa2.63□□□□□ -1.99
VRK3-211ENST00000596445 MT4P47944 62 aa2.63□□□□□ -1.99
VRK3-211ENST00000596445 HMCN1Q96RW7 5635 aa2.61□□□□□ -1.99
VRK3-211ENST00000596445 LUZP6Q538Z0 58 aa2.6□□□□□ -1.99
VRK3-211ENST00000596445 KRTAP12-4P60329 112 aa2.56□□□□□ -2
VRK3-211ENST00000596445 SPRR5A0A1B0GTR4 108 aa2.54□□□□□ -2
VRK3-211ENST00000596445 MT1AP04731 61 aa2.54□□□□□ -2
VRK3-211ENST00000596445 KRTAP20-2Q3LI61 65 aa2.52□□□□□ -2.01
VRK3-211ENST00000596445 KRTAP6-1Q3LI64 71 aa2.51□□□□□ -2.01
VRK3-211ENST00000596445 SYNE1Q8NF91 8797 aaKnown RBP2.51□□□□□ -2.01
VRK3-211ENST00000596445 KRTAP4-12Q9BQ66 201 aa2.48□□□□□ -2.01
VRK3-211ENST00000596445 KRTAP5-3Q6L8H2 238 aa2.44□□□□□ -2.02
VRK3-211ENST00000596445 KRTAP9-4Q9BYQ2 154 aa2.44□□□□□ -2.02
VRK3-211ENST00000596445 AHNAK2Q8IVF2 5795 aa2.44□□□□□ -2.02
VRK3-211ENST00000596445 KRTAP9-9Q9BYP9 154 aa2.42□□□□□ -2.02
VRK3-211ENST00000596445 KRTAP5-2Q701N4 177 aa2.39□□□□□ -2.03
VRK3-211ENST00000596445 KRTAP6-2Q3LI66 62 aa2.37□□□□□ -2.03
VRK3-211ENST00000596445 KRTAP5-10Q6L8G5 202 aa2.35□□□□□ -2.03
VRK3-211ENST00000596445 MT3P25713 68 aa2.32□□□□□ -2.04
VRK3-211ENST00000596445 INE1O15225 51 aa2.3□□□□□ -2.04
VRK3-211ENST00000596445 KRTAP4-11Q9BYQ6 195 aa2.25□□□□□ -2.05
VRK3-211ENST00000596445 KRTAP5-7Q6L8G8 165 aa2.24□□□□□ -2.05
VRK3-211ENST00000596445 KRTAP5-8O75690 187 aa2.17□□□□□ -2.06
VRK3-211ENST00000596445 KRTAP4-2Q9BYR5 136 aa2.17□□□□□ -2.06
VRK3-211ENST00000596445 OBSCNQ5VST9 7968 aa2.15□□□□□ -2.06
VRK3-211ENST00000596445 AHNAKQ09666 5890 aaKnown RBP2.14□□□□□ -2.07
VRK3-211ENST00000596445 LCE1EQ5T753 118 aa2.1□□□□□ -2.07
VRK3-211ENST00000596445 KRTAP5-1Q6L8H4 278 aa2.1□□□□□ -2.07
VRK3-211ENST00000596445 LCE3DQ9BYE3 92 aa2.06□□□□□ -2.08
VRK3-211ENST00000596445 MUC5BQ9HC84 5762 aaPredicted RBP2.06□□□□□ -2.08
VRK3-211ENST00000596445 MUC5ACP98088 5654 aa2.02□□□□□ -2.09
VRK3-211ENST00000596445 LCE3EQ5T5B0 92 aa1.96□□□□□ -2.1
VRK3-211ENST00000596445 LCE1CQ5T751 118 aa1.94□□□□□ -2.1
VRK3-211ENST00000596445 LCE1BQ5T7P3 118 aa1.94□□□□□ -2.1
VRK3-211ENST00000596445 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.79□□□□□ -2.12
VRK3-211ENST00000596445 KRTAP5-11Q6L8G4 156 aa1.74□□□□□ -2.13
VRK3-211ENST00000596445 KRTAP21-2Q3LI59 83 aa1.66□□□□□ -2.14
VRK3-211ENST00000596445 LCE1FQ5T754 118 aa1.65□□□□□ -2.15
VRK3-211ENST00000596445 PRM1P04553 51 aa1.57□□□□□ -2.16
VRK3-211ENST00000596445 PHGR1C9JFL3 82 aa1.49□□□□□ -2.17
VRK3-211ENST00000596445 KRTAP4-4Q9BYR3 166 aa1.48□□□□□ -2.17
VRK3-211ENST00000596445 MUC19Q7Z5P9 8384 aa1.32□□□□□ -2.2
VRK3-211ENST00000596445 KRTAP21-1Q3LI58 79 aa1.04□□□□□ -2.24
VRK3-211ENST00000596445 MUC16Q8WXI7 14507 aa1.02□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 54.8 ms