RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 SYNE2Q8WXH0 6885 aaKnown RBP4.84□□□□□ -1.63
VRK3-205ENST00000593919 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.81□□□□□ -1.64
VRK3-205ENST00000593919 MT1EP04732 61 aa4.8□□□□□ -1.64
VRK3-205ENST00000593919 MUC12Q9UKN1 5478 aa4.79□□□□□ -1.64
VRK3-205ENST00000593919 KRTAP9-7A8MTY7 169 aa4.78□□□□□ -1.64
VRK3-205ENST00000593919 SPRR2FQ96RM1 72 aa4.78□□□□□ -1.64
VRK3-205ENST00000593919 MT3P25713 68 aa4.76□□□□□ -1.65
VRK3-205ENST00000593919 KRTAP5-9P26371 169 aa4.73□□□□□ -1.65
VRK3-205ENST00000593919 MT1LQ93083 61 aa4.7□□□□□ -1.66
VRK3-205ENST00000593919 KRTAP6-3Q3LI67 103 aa4.66□□□□□ -1.66
VRK3-205ENST00000593919 MDN1Q9NU22 5596 aa4.66□□□□□ -1.66
VRK3-205ENST00000593919 LCE3CQ5T5A8 94 aa4.65□□□□□ -1.67
VRK3-205ENST00000593919 KRTAP9-9Q9BYP9 154 aa4.65□□□□□ -1.67
VRK3-205ENST00000593919 KRTAP19-3Q7Z4W3 81 aa4.63□□□□□ -1.67
VRK3-205ENST00000593919 KRTAP2-2Q9BYT5 123 aa4.58□□□□□ -1.68
VRK3-205ENST00000593919 MT1GP13640 62 aa4.57□□□□□ -1.68
VRK3-205ENST00000593919 LCE1AQ5T7P2 110 aa4.56□□□□□ -1.68
VRK3-205ENST00000593919 KRTAP4-7Q9BYR0 210 aa4.56□□□□□ -1.68
VRK3-205ENST00000593919 SPRR2EP22531 72 aa4.54□□□□□ -1.68
VRK3-205ENST00000593919 SPRR2BP35325 72 aa4.54□□□□□ -1.68
VRK3-205ENST00000593919 SPRR2AP35326 72 aa4.54□□□□□ -1.68
VRK3-205ENST00000593919 MT1MQ8N339 61 aa4.53□□□□□ -1.68
VRK3-205ENST00000593919 LCE4AQ5TA78 99 aa4.51□□□□□ -1.69
VRK3-205ENST00000593919 KRTAP4-3Q9BYR4 195 aa4.46□□□□□ -1.7
VRK3-205ENST00000593919 KRTAP9-6A8MVA2 160 aa4.45□□□□□ -1.7
VRK3-205ENST00000593919 DSTQ03001 7570 aaKnown RBP4.43□□□□□ -1.7
VRK3-205ENST00000593919 LCE1FQ5T754 118 aa4.43□□□□□ -1.7
VRK3-205ENST00000593919 SPRR2DP22532 72 aa4.37□□□□□ -1.71
VRK3-205ENST00000593919 NEBP20929 6669 aa4.34□□□□□ -1.71
VRK3-205ENST00000593919 LOC100996750A0A140TA64 210 aa4.29□□□□□ -1.72
VRK3-205ENST00000593919 KRTAP2-3P0C7H8 128 aa4.2□□□□□ -1.74
VRK3-205ENST00000593919 LCE3BQ5TA77 95 aa4.2□□□□□ -1.74
VRK3-205ENST00000593919 KRTAP2-4Q9BYR9 128 aa4.2□□□□□ -1.74
VRK3-205ENST00000593919 KRTAP2-1Q9BYU5 128 aa4.2□□□□□ -1.74
VRK3-205ENST00000593919 KRTAP20-1Q3LI63 56 aa4.13□□□□□ -1.75
VRK3-205ENST00000593919 GPR98Q8WXG9 6306 aa4.13□□□□□ -1.75
VRK3-205ENST00000593919 KRTAP5-5Q701N2 237 aaPredicted RBP4.09□□□□□ -1.75
VRK3-205ENST00000593919 MT1AP04731 61 aa3.98□□□□□ -1.77
VRK3-205ENST00000593919 KRTAP6-1Q3LI64 71 aa3.97□□□□□ -1.77
VRK3-205ENST00000593919 KRTAP5-4Q6L8H1 288 aa3.93□□□□□ -1.78
VRK3-205ENST00000593919 KRTAP4-12Q9BQ66 201 aa3.93□□□□□ -1.78
VRK3-205ENST00000593919 SYNE1Q8NF91 8797 aaKnown RBP3.89□□□□□ -1.79
VRK3-205ENST00000593919 LCE1EQ5T753 118 aa3.82□□□□□ -1.8
VRK3-205ENST00000593919 MT4P47944 62 aa3.81□□□□□ -1.8
VRK3-205ENST00000593919 KRTAP12-4P60329 112 aa3.8□□□□□ -1.8
VRK3-205ENST00000593919 KRTAP4-9Q9BYQ8 210 aa3.79□□□□□ -1.8
VRK3-205ENST00000593919 KRTAP4-6Q9BYQ5 205 aa3.78□□□□□ -1.8
VRK3-205ENST00000593919 LCE3EQ5T5B0 92 aa3.75□□□□□ -1.81
VRK3-205ENST00000593919 LCE1DQ5T752 114 aa3.75□□□□□ -1.81
VRK3-205ENST00000593919 HMCN1Q96RW7 5635 aa3.74□□□□□ -1.81
VRK3-205ENST00000593919 KRTAP20-2Q3LI61 65 aa3.69□□□□□ -1.82
VRK3-205ENST00000593919 KRTAP6-2Q3LI66 62 aa3.66□□□□□ -1.82
VRK3-205ENST00000593919 KRTAP5-2Q701N4 177 aa3.56□□□□□ -1.84
VRK3-205ENST00000593919 KRTAP5-3Q6L8H2 238 aa3.55□□□□□ -1.84
VRK3-205ENST00000593919 LCE3DQ9BYE3 92 aa3.54□□□□□ -1.84
VRK3-205ENST00000593919 AHNAK2Q8IVF2 5795 aa3.47□□□□□ -1.85
VRK3-205ENST00000593919 OBSCNQ5VST9 7968 aa3.47□□□□□ -1.85
VRK3-205ENST00000593919 KRTAP5-7Q6L8G8 165 aa3.29□□□□□ -1.88
VRK3-205ENST00000593919 KRTAP5-10Q6L8G5 202 aa3.27□□□□□ -1.89
VRK3-205ENST00000593919 PRM1P04553 51 aa3.25□□□□□ -1.89
VRK3-205ENST00000593919 AHNAKQ09666 5890 aaKnown RBP3.23□□□□□ -1.89
VRK3-205ENST00000593919 KRTAP4-11Q9BYQ6 195 aa3.21□□□□□ -1.89
VRK3-205ENST00000593919 MUC5BQ9HC84 5762 aaPredicted RBP3.15□□□□□ -1.91
VRK3-205ENST00000593919 KRTAP5-8O75690 187 aa3.1□□□□□ -1.91
VRK3-205ENST00000593919 KRTAP5-1Q6L8H4 278 aa3.1□□□□□ -1.91
VRK3-205ENST00000593919 MUC5ACP98088 5654 aa2.98□□□□□ -1.93
VRK3-205ENST00000593919 LCE1BQ5T7P3 118 aa2.97□□□□□ -1.93
VRK3-205ENST00000593919 KRTAP4-2Q9BYR5 136 aa2.96□□□□□ -1.94
VRK3-205ENST00000593919 LCE1CQ5T751 118 aa2.94□□□□□ -1.94
VRK3-205ENST00000593919 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.74□□□□□ -1.97
VRK3-205ENST00000593919 KRTAP21-2Q3LI59 83 aa2.6□□□□□ -1.99
VRK3-205ENST00000593919 KRTAP5-11Q6L8G4 156 aa2.6□□□□□ -1.99
VRK3-205ENST00000593919 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
VRK3-205ENST00000593919 PHGR1C9JFL3 82 aa2.23□□□□□ -2.05
VRK3-205ENST00000593919 KRTAP21-1Q3LI58 79 aa2.1□□□□□ -2.07
VRK3-205ENST00000593919 MUC19Q7Z5P9 8384 aa2.06□□□□□ -2.08
VRK3-205ENST00000593919 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 80.7 ms