RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 SMIM26A0A096LP01 95 aa5.34□□□□□ -1.55
PNKP-202ENST00000593706 KRTAP19-5Q3LI72 72 aa5.33□□□□□ -1.56
PNKP-202ENST00000593706 KRTAP19-4Q3LI73 84 aa5.33□□□□□ -1.56
PNKP-202ENST00000593706 LCE4AQ5TA78 99 aa5.33□□□□□ -1.56
PNKP-202ENST00000593706 AHNAK2Q8IVF2 5795 aa5.33□□□□□ -1.56
PNKP-202ENST00000593706 PRR15LQ9BU68 103 aa5.31□□□□□ -1.56
PNKP-202ENST00000593706 MT1MQ8N339 61 aa5.26□□□□□ -1.57
PNKP-202ENST00000593706 C10orf95Q9H7T3 257 aa5.24□□□□□ -1.57
PNKP-202ENST00000593706 MT1LQ93083 61 aa5.2□□□□□ -1.58
PNKP-202ENST00000593706 LCE3AQ5TA76 89 aa5.18□□□□□ -1.58
PNKP-202ENST00000593706 UQCR11O14957 56 aa5.17□□□□□ -1.58
PNKP-202ENST00000593706 KRTAP5-10Q6L8G5 202 aa5.17□□□□□ -1.58
PNKP-202ENST00000593706 TNP1P09430 55 aa5.15□□□□□ -1.59
PNKP-202ENST00000593706 KRTAP5-4Q6L8H1 288 aa5.15□□□□□ -1.59
PNKP-202ENST00000593706 KRTAP4-3Q9BYR4 195 aa5.15□□□□□ -1.59
PNKP-202ENST00000593706 KRTAP4-6Q9BYQ5 205 aa5.13□□□□□ -1.59
PNKP-202ENST00000593706 PSPHP1O15172 72 aa5.1□□□□□ -1.59
PNKP-202ENST00000593706 Q1T7F1 81 aa5.09□□□□□ -1.59
PNKP-202ENST00000593706 MIR22HGQ0VDD5 57 aa5.08□□□□□ -1.6
PNKP-202ENST00000593706 V9GYY9 64 aa5.05□□□□□ -1.6
PNKP-202ENST00000593706 KRTAP5-7Q6L8G8 165 aa5□□□□□ -1.61
PNKP-202ENST00000593706 KRTAP5-3Q6L8H2 238 aa4.99□□□□□ -1.61
PNKP-202ENST00000593706 KRTAP12-3P60328 96 aa4.97□□□□□ -1.61
PNKP-202ENST00000593706 PRAC1Q96KF2 57 aa4.94□□□□□ -1.62
PNKP-202ENST00000593706 KRTAP4-7Q9BYR0 210 aa4.94□□□□□ -1.62
PNKP-202ENST00000593706 RPS28P62857 69 aaKnown RBP4.92□□□□□ -1.62
PNKP-202ENST00000593706 KRTAP20-2Q3LI61 65 aa4.91□□□□□ -1.62
PNKP-202ENST00000593706 KRTAP25-1Q3LHN0 102 aa4.9□□□□□ -1.63
PNKP-202ENST00000593706 KRTAP15-1Q3LI76 137 aa4.9□□□□□ -1.63
PNKP-202ENST00000593706 A6NED7 52 aa4.88□□□□□ -1.63
PNKP-202ENST00000593706 K7ERS5 55 aa4.88□□□□□ -1.63
PNKP-202ENST00000593706 SPRR5A0A1B0GTR4 108 aa4.85□□□□□ -1.63
PNKP-202ENST00000593706 KRTAP5-5Q701N2 237 aaPredicted RBP4.83□□□□□ -1.64
PNKP-202ENST00000593706 KRTAP12-4P60329 112 aa4.82□□□□□ -1.64
PNKP-202ENST00000593706 SYNE1Q8NF91 8797 aaKnown RBP4.72□□□□□ -1.65
PNKP-202ENST00000593706 LOC100996750A0A140TA64 210 aa4.7□□□□□ -1.66
PNKP-202ENST00000593706 CDC42SE1Q9NRR8 79 aa4.69□□□□□ -1.66
PNKP-202ENST00000593706 ROMO1P60602 79 aa4.65□□□□□ -1.67
PNKP-202ENST00000593706 LCE3CQ5T5A8 94 aa4.59□□□□□ -1.67
PNKP-202ENST00000593706 KRTAP9-4Q9BYQ2 154 aa4.57□□□□□ -1.68
PNKP-202ENST00000593706 KRTAP4-11Q9BYQ6 195 aa4.55□□□□□ -1.68
PNKP-202ENST00000593706 NDUFAF8A1L188 74 aa4.47□□□□□ -1.69
PNKP-202ENST00000593706 KRTAP5-2Q701N4 177 aa4.47□□□□□ -1.69
PNKP-202ENST00000593706 KRTAP9-9Q9BYP9 154 aa4.45□□□□□ -1.7
PNKP-202ENST00000593706 MUC5ACP98088 5654 aa4.45□□□□□ -1.7
PNKP-202ENST00000593706 OBSCNQ5VST9 7968 aa4.45□□□□□ -1.7
PNKP-202ENST00000593706 AHNAKQ09666 5890 aaKnown RBP4.44□□□□□ -1.7
PNKP-202ENST00000593706 MUC5BQ9HC84 5762 aaPredicted RBP4.42□□□□□ -1.7
PNKP-202ENST00000593706 MT1AP04731 61 aa4.42□□□□□ -1.7
PNKP-202ENST00000593706 KRTAP6-1Q3LI64 71 aa4.42□□□□□ -1.7
PNKP-202ENST00000593706 KRTAP4-12Q9BQ66 201 aa4.41□□□□□ -1.7
PNKP-202ENST00000593706 KRTAP9-6A8MVA2 160 aa4.4□□□□□ -1.71
PNKP-202ENST00000593706 KRTAP5-8O75690 187 aa4.39□□□□□ -1.71
PNKP-202ENST00000593706 BRK1Q8WUW1 75 aa4.34□□□□□ -1.71
PNKP-202ENST00000593706 KRTAP6-2Q3LI66 62 aa4.29□□□□□ -1.72
PNKP-202ENST00000593706 PRO0628Q9UI54 55 aa4.26□□□□□ -1.73
PNKP-202ENST00000593706 MT3P25713 68 aa4.07□□□□□ -1.76
PNKP-202ENST00000593706 PMAIP1Q13794 54 aa4.06□□□□□ -1.76
PNKP-202ENST00000593706 KRTAP5-1Q6L8H4 278 aa4.05□□□□□ -1.76
PNKP-202ENST00000593706 LUZP6Q538Z0 58 aa3.97□□□□□ -1.77
PNKP-202ENST00000593706 LCE1EQ5T753 118 aa3.78□□□□□ -1.8
PNKP-202ENST00000593706 KTN1-AS1Q86SY8 53 aa3.67□□□□□ -1.82
PNKP-202ENST00000593706 LCE1BQ5T7P3 118 aa3.63□□□□□ -1.83
PNKP-202ENST00000593706 LCE1FQ5T754 118 aa3.61□□□□□ -1.83
PNKP-202ENST00000593706 KRTAP4-2Q9BYR5 136 aa3.6□□□□□ -1.83
PNKP-202ENST00000593706 LCE1CQ5T751 118 aa3.51□□□□□ -1.85
PNKP-202ENST00000593706 LCE3DQ9BYE3 92 aa3.28□□□□□ -1.88
PNKP-202ENST00000593706 KRTAP5-11Q6L8G4 156 aa3.22□□□□□ -1.89
PNKP-202ENST00000593706 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.15□□□□□ -1.91
PNKP-202ENST00000593706 LCE3EQ5T5B0 92 aa3.08□□□□□ -1.92
PNKP-202ENST00000593706 PHGR1C9JFL3 82 aa3.06□□□□□ -1.92
PNKP-202ENST00000593706 KRTAP21-2Q3LI59 83 aa2.9□□□□□ -1.95
PNKP-202ENST00000593706 MUC19Q7Z5P9 8384 aa2.75□□□□□ -1.97
PNKP-202ENST00000593706 KRTAP4-4Q9BYR3 166 aa2.73□□□□□ -1.97
PNKP-202ENST00000593706 INE1O15225 51 aa2.7□□□□□ -1.98
PNKP-202ENST00000593706 PRM1P04553 51 aa2.41□□□□□ -2.02
PNKP-202ENST00000593706 KRTAP21-1Q3LI58 79 aa2.31□□□□□ -2.04
PNKP-202ENST00000593706 MUC16Q8WXI7 14507 aa1.92□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 116.8 ms