RNA–Protein interactions for RNA: ENST00000590260.5

DDX39A-212, Transcript of DExD-box helicase 39A, humanhuman

TSL 2

Gene DDX39A, Length 988 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-212ENST00000590260 Q1T7F1 81 aa6.4□□□□□ -1.38
DDX39A-212ENST00000590260 PP632Q6XCG6 107 aa6.38□□□□□ -1.39
DDX39A-212ENST00000590260 KRTAP4-3Q9BYR4 195 aa6.37□□□□□ -1.39
DDX39A-212ENST00000590260 V9GYY9 64 aa6.34□□□□□ -1.39
DDX39A-212ENST00000590260 KRTAP12-3P60328 96 aa6.31□□□□□ -1.4
DDX39A-212ENST00000590260 KRTAP4-9Q9BYQ8 210 aa6.3□□□□□ -1.4
DDX39A-212ENST00000590260 KRTAP4-7Q9BYR0 210 aa6.27□□□□□ -1.41
DDX39A-212ENST00000590260 KRTAP25-1Q3LHN0 102 aa6.24□□□□□ -1.41
DDX39A-212ENST00000590260 K7ERS5 55 aa6.17□□□□□ -1.42
DDX39A-212ENST00000590260 LCE1DQ5T752 114 aa6.17□□□□□ -1.42
DDX39A-212ENST00000590260 A6NED7 52 aa6.13□□□□□ -1.43
DDX39A-212ENST00000590260 PCP4P48539 62 aa6.13□□□□□ -1.43
DDX39A-212ENST00000590260 LCE4AQ5TA78 99 aa6.13□□□□□ -1.43
DDX39A-212ENST00000590260 RPS28P62857 69 aaKnown RBP6.12□□□□□ -1.43
DDX39A-212ENST00000590260 KRTAP5-4Q6L8H1 288 aa6.12□□□□□ -1.43
DDX39A-212ENST00000590260 MT4P47944 62 aa6.07□□□□□ -1.44
DDX39A-212ENST00000590260 HMCN1Q96RW7 5635 aa6.04□□□□□ -1.44
DDX39A-212ENST00000590260 KRTAP23-1A1A580 65 aa6.02□□□□□ -1.45
DDX39A-212ENST00000590260 KRTAP4-6Q9BYQ5 205 aa5.99□□□□□ -1.45
DDX39A-212ENST00000590260 KRTAP5-5Q701N2 237 aaPredicted RBP5.97□□□□□ -1.45
DDX39A-212ENST00000590260 CDC42SE1Q9NRR8 79 aa5.93□□□□□ -1.46
DDX39A-212ENST00000590260 LOC100996750A0A140TA64 210 aa5.92□□□□□ -1.46
DDX39A-212ENST00000590260 KRTAP15-1Q3LI76 137 aa5.91□□□□□ -1.46
DDX39A-212ENST00000590260 GPR98Q8WXG9 6306 aa5.89□□□□□ -1.47
DDX39A-212ENST00000590260 ROMO1P60602 79 aa5.89□□□□□ -1.47
DDX39A-212ENST00000590260 KRTAP19-4Q3LI73 84 aa5.87□□□□□ -1.47
DDX39A-212ENST00000590260 LCE3CQ5T5A8 94 aa5.83□□□□□ -1.48
DDX39A-212ENST00000590260 AHNAK2Q8IVF2 5795 aa5.78□□□□□ -1.48
DDX39A-212ENST00000590260 KRTAP20-2Q3LI61 65 aa5.75□□□□□ -1.49
DDX39A-212ENST00000590260 SPRR5A0A1B0GTR4 108 aa5.7□□□□□ -1.5
DDX39A-212ENST00000590260 KRTAP5-10Q6L8G5 202 aa5.69□□□□□ -1.5
DDX39A-212ENST00000590260 SYNE1Q8NF91 8797 aaKnown RBP5.68□□□□□ -1.5
DDX39A-212ENST00000590260 KRTAP12-4P60329 112 aa5.63□□□□□ -1.51
DDX39A-212ENST00000590260 KRTAP9-6A8MVA2 160 aa5.62□□□□□ -1.51
DDX39A-212ENST00000590260 KRTAP5-3Q6L8H2 238 aa5.62□□□□□ -1.51
DDX39A-212ENST00000590260 KRTAP6-1Q3LI64 71 aa5.53□□□□□ -1.52
DDX39A-212ENST00000590260 MT1AP04731 61 aa5.52□□□□□ -1.53
DDX39A-212ENST00000590260 KRTAP5-7Q6L8G8 165 aa5.42□□□□□ -1.54
DDX39A-212ENST00000590260 KRTAP5-2Q701N4 177 aa5.4□□□□□ -1.54
DDX39A-212ENST00000590260 BRK1Q8WUW1 75 aa5.35□□□□□ -1.55
DDX39A-212ENST00000590260 KRTAP9-4Q9BYQ2 154 aa5.33□□□□□ -1.56
DDX39A-212ENST00000590260 KRTAP6-2Q3LI66 62 aa5.23□□□□□ -1.57
DDX39A-212ENST00000590260 KRTAP4-11Q9BYQ6 195 aa5.2□□□□□ -1.58
DDX39A-212ENST00000590260 KRTAP5-8O75690 187 aa5.07□□□□□ -1.6
DDX39A-212ENST00000590260 MT3P25713 68 aa5□□□□□ -1.61
DDX39A-212ENST00000590260 PMAIP1Q13794 54 aa5□□□□□ -1.61
DDX39A-212ENST00000590260 PRAC1Q96KF2 57 aa4.93□□□□□ -1.62
DDX39A-212ENST00000590260 OBSCNQ5VST9 7968 aa4.9□□□□□ -1.63
DDX39A-212ENST00000590260 KRTAP5-1Q6L8H4 278 aa4.83□□□□□ -1.64
DDX39A-212ENST00000590260 MUC5BQ9HC84 5762 aaPredicted RBP4.71□□□□□ -1.65
DDX39A-212ENST00000590260 MUC5ACP98088 5654 aa4.7□□□□□ -1.66
DDX39A-212ENST00000590260 KRTAP9-9Q9BYP9 154 aa4.68□□□□□ -1.66
DDX39A-212ENST00000590260 PRO0628Q9UI54 55 aa4.68□□□□□ -1.66
DDX39A-212ENST00000590260 AHNAKQ09666 5890 aaKnown RBP4.66□□□□□ -1.66
DDX39A-212ENST00000590260 LCE1EQ5T753 118 aa4.58□□□□□ -1.68
DDX39A-212ENST00000590260 KTN1-AS1Q86SY8 53 aa4.48□□□□□ -1.69
DDX39A-212ENST00000590260 KRTAP4-2Q9BYR5 136 aa4.41□□□□□ -1.7
DDX39A-212ENST00000590260 LCE1BQ5T7P3 118 aa4.3□□□□□ -1.72
DDX39A-212ENST00000590260 LCE1CQ5T751 118 aa4.27□□□□□ -1.73
DDX39A-212ENST00000590260 SVIPQ8NHG7 77 aa4.23□□□□□ -1.73
DDX39A-212ENST00000590260 LCE3DQ9BYE3 92 aa4.19□□□□□ -1.74
DDX39A-212ENST00000590260 LCE3EQ5T5B0 92 aa3.95□□□□□ -1.78
DDX39A-212ENST00000590260 LUZP6Q538Z0 58 aa3.94□□□□□ -1.78
DDX39A-212ENST00000590260 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.93□□□□□ -1.78
DDX39A-212ENST00000590260 KRTAP4-12Q9BQ66 201 aa3.92□□□□□ -1.78
DDX39A-212ENST00000590260 KRTAP5-11Q6L8G4 156 aa3.87□□□□□ -1.79
DDX39A-212ENST00000590260 LCE1FQ5T754 118 aa3.69□□□□□ -1.82
DDX39A-212ENST00000590260 KRTAP21-2Q3LI59 83 aa3.66□□□□□ -1.82
DDX39A-212ENST00000590260 PHGR1C9JFL3 82 aa3.34□□□□□ -1.87
DDX39A-212ENST00000590260 KRTAP4-4Q9BYR3 166 aa3.33□□□□□ -1.88
DDX39A-212ENST00000590260 NDUFAF8A1L188 74 aa3.3□□□□□ -1.88
DDX39A-212ENST00000590260 PRM1P04553 51 aa3.05□□□□□ -1.92
DDX39A-212ENST00000590260 MUC19Q7Z5P9 8384 aa3.04□□□□□ -1.92
DDX39A-212ENST00000590260 INE1O15225 51 aa2.58□□□□□ -2
DDX39A-212ENST00000590260 A0A0A0MQY5 61 aa2.57□□□□□ -2
DDX39A-212ENST00000590260 KRTAP21-1Q3LI58 79 aa2.44□□□□□ -2.02
DDX39A-212ENST00000590260 MUC16Q8WXI7 14507 aa2.2□□□□□ -2.06
DDX39A-212ENST00000590260 H3BS24 57 aa2.13□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 9.8 ms