RNA–Protein interactions for RNA: ENST00000588555.1

SCAMP4-210, Transcript of secretory carrier membrane protein 4, humanhuman

Gene SCAMP4, Length 1,785 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-210ENST00000588555 KRTAP19-3Q7Z4W3 81 aa9.15□□□□□ -0.94
SCAMP4-210ENST00000588555 MDN1Q9NU22 5596 aa9.14□□□□□ -0.95
SCAMP4-210ENST00000588555 KRTAP19-4Q3LI73 84 aa9.09□□□□□ -0.95
SCAMP4-210ENST00000588555 LCE3CQ5T5A8 94 aa9.07□□□□□ -0.96
SCAMP4-210ENST00000588555 MT1GP13640 62 aa9.04□□□□□ -0.96
SCAMP4-210ENST00000588555 LCE1AQ5T7P2 110 aa9.04□□□□□ -0.96
SCAMP4-210ENST00000588555 LCE5AQ5TCM9 118 aa9.03□□□□□ -0.96
SCAMP4-210ENST00000588555 KRTAP9-7A8MTY7 169 aa9.02□□□□□ -0.97
SCAMP4-210ENST00000588555 KRTAP4-7Q9BYR0 210 aa8.98□□□□□ -0.97
SCAMP4-210ENST00000588555 MT1MQ8N339 61 aa8.96□□□□□ -0.98
SCAMP4-210ENST00000588555 SPRR5A0A1B0GTR4 108 aa8.95□□□□□ -0.98
SCAMP4-210ENST00000588555 SPRR2EP22531 72 aa8.94□□□□□ -0.98
SCAMP4-210ENST00000588555 SPRR2BP35325 72 aa8.94□□□□□ -0.98
SCAMP4-210ENST00000588555 SPRR2AP35326 72 aa8.94□□□□□ -0.98
SCAMP4-210ENST00000588555 KRTAP4-3Q9BYR4 195 aa8.78□□□□□ -1
SCAMP4-210ENST00000588555 NEBP20929 6669 aa8.68□□□□□ -1.02
SCAMP4-210ENST00000588555 KRTAP9-6A8MVA2 160 aa8.63□□□□□ -1.03
SCAMP4-210ENST00000588555 DSTQ03001 7570 aaKnown RBP8.63□□□□□ -1.03
SCAMP4-210ENST00000588555 SPRR2DP22532 72 aa8.61□□□□□ -1.03
SCAMP4-210ENST00000588555 LUZP6Q538Z0 58 aa8.45□□□□□ -1.06
SCAMP4-210ENST00000588555 LOC100996750A0A140TA64 210 aa8.44□□□□□ -1.06
SCAMP4-210ENST00000588555 LCE3BQ5TA77 95 aa8.29□□□□□ -1.08
SCAMP4-210ENST00000588555 NDUFAF8A1L188 74 aa8.19□□□□□ -1.1
SCAMP4-210ENST00000588555 KRTAP5-5Q701N2 237 aaPredicted RBP8.12□□□□□ -1.11
SCAMP4-210ENST00000588555 KRTAP2-3P0C7H8 128 aa8.09□□□□□ -1.11
SCAMP4-210ENST00000588555 KRTAP2-4Q9BYR9 128 aa8.09□□□□□ -1.11
SCAMP4-210ENST00000588555 H3BS24 57 aa7.99□□□□□ -1.13
SCAMP4-210ENST00000588555 KRTAP20-1Q3LI63 56 aa7.98□□□□□ -1.13
SCAMP4-210ENST00000588555 KRTAP2-2Q9BYT5 123 aa7.92□□□□□ -1.14
SCAMP4-210ENST00000588555 KRTAP2-1Q9BYU5 128 aa7.92□□□□□ -1.14
SCAMP4-210ENST00000588555 MT1AP04731 61 aa7.88□□□□□ -1.15
SCAMP4-210ENST00000588555 KRTAP6-1Q3LI64 71 aa7.83□□□□□ -1.16
SCAMP4-210ENST00000588555 KRTAP5-4Q6L8H1 288 aa7.82□□□□□ -1.16
SCAMP4-210ENST00000588555 SYNE1Q8NF91 8797 aaKnown RBP7.74□□□□□ -1.17
SCAMP4-210ENST00000588555 LCE4AQ5TA78 99 aa7.65□□□□□ -1.18
SCAMP4-210ENST00000588555 KRTAP12-4P60329 112 aa7.5□□□□□ -1.21
SCAMP4-210ENST00000588555 KRTAP9-4Q9BYQ2 154 aa7.5□□□□□ -1.21
SCAMP4-210ENST00000588555 MT4P47944 62 aa7.48□□□□□ -1.21
SCAMP4-210ENST00000588555 KRTAP4-9Q9BYQ8 210 aa7.46□□□□□ -1.22
SCAMP4-210ENST00000588555 KRTAP4-6Q9BYQ5 205 aa7.45□□□□□ -1.22
SCAMP4-210ENST00000588555 LCE1DQ5T752 114 aa7.41□□□□□ -1.22
SCAMP4-210ENST00000588555 HMCN1Q96RW7 5635 aa7.4□□□□□ -1.23
SCAMP4-210ENST00000588555 KRTAP20-2Q3LI61 65 aa7.3□□□□□ -1.24
SCAMP4-210ENST00000588555 KRTAP6-2Q3LI66 62 aa7.23□□□□□ -1.25
SCAMP4-210ENST00000588555 MT3P25713 68 aa7.13□□□□□ -1.27
SCAMP4-210ENST00000588555 A0A0A0MQY5 61 aa7.09□□□□□ -1.27
SCAMP4-210ENST00000588555 KRTAP5-2Q701N4 177 aa7.07□□□□□ -1.28
SCAMP4-210ENST00000588555 KRTAP5-3Q6L8H2 238 aa7.05□□□□□ -1.28
SCAMP4-210ENST00000588555 LCE3DQ9BYE3 92 aa6.77□□□□□ -1.33
SCAMP4-210ENST00000588555 INE1O15225 51 aa6.72□□□□□ -1.33
SCAMP4-210ENST00000588555 OBSCNQ5VST9 7968 aa6.71□□□□□ -1.34
SCAMP4-210ENST00000588555 AHNAK2Q8IVF2 5795 aa6.58□□□□□ -1.36
SCAMP4-210ENST00000588555 LCE3EQ5T5B0 92 aa6.57□□□□□ -1.36
SCAMP4-210ENST00000588555 KRTAP4-11Q9BYQ6 195 aa6.35□□□□□ -1.39
SCAMP4-210ENST00000588555 KRTAP4-12Q9BQ66 201 aa6.34□□□□□ -1.4
SCAMP4-210ENST00000588555 LCE1EQ5T753 118 aa6.25□□□□□ -1.41
SCAMP4-210ENST00000588555 KRTAP5-10Q6L8G5 202 aa6.25□□□□□ -1.41
SCAMP4-210ENST00000588555 KRTAP5-8O75690 187 aa6.13□□□□□ -1.43
SCAMP4-210ENST00000588555 KRTAP5-1Q6L8H4 278 aa6.13□□□□□ -1.43
SCAMP4-210ENST00000588555 GPR98Q8WXG9 6306 aa6.04□□□□□ -1.44
SCAMP4-210ENST00000588555 MUC5ACP98088 5654 aa5.96□□□□□ -1.45
SCAMP4-210ENST00000588555 KRTAP9-9Q9BYP9 154 aa5.93□□□□□ -1.46
SCAMP4-210ENST00000588555 KRTAP5-7Q6L8G8 165 aa5.93□□□□□ -1.46
SCAMP4-210ENST00000588555 KRTAP4-2Q9BYR5 136 aa5.86□□□□□ -1.47
SCAMP4-210ENST00000588555 LCE1BQ5T7P3 118 aa5.83□□□□□ -1.48
SCAMP4-210ENST00000588555 LCE1CQ5T751 118 aa5.83□□□□□ -1.48
SCAMP4-210ENST00000588555 PRM1P04553 51 aa5.66□□□□□ -1.5
SCAMP4-210ENST00000588555 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.45□□□□□ -1.54
SCAMP4-210ENST00000588555 MUC5BQ9HC84 5762 aaPredicted RBP5.31□□□□□ -1.56
SCAMP4-210ENST00000588555 KRTAP5-11Q6L8G4 156 aa5.16□□□□□ -1.58
SCAMP4-210ENST00000588555 KRTAP21-2Q3LI59 83 aa5.15□□□□□ -1.58
SCAMP4-210ENST00000588555 AHNAKQ09666 5890 aaKnown RBP5.03□□□□□ -1.6
SCAMP4-210ENST00000588555 LCE1FQ5T754 118 aa4.68□□□□□ -1.66
SCAMP4-210ENST00000588555 KRTAP4-4Q9BYR3 166 aa4.55□□□□□ -1.68
SCAMP4-210ENST00000588555 PHGR1C9JFL3 82 aa4.43□□□□□ -1.7
SCAMP4-210ENST00000588555 MUC19Q7Z5P9 8384 aa4.02□□□□□ -1.77
SCAMP4-210ENST00000588555 KRTAP21-1Q3LI58 79 aa3.45□□□□□ -1.86
SCAMP4-210ENST00000588555 MUC16Q8WXI7 14507 aa2.86□□□□□ -1.95
Retrieved 78 of 20,778 RNA–protein pairs in 11.3 ms