RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 CRCT1Q9UGL9 99 aa4.08□□□□□ -1.76
SMCHD1-212ENST00000585229 PRO2289Q9P1D8 64 aa4.07□□□□□ -1.76
SMCHD1-212ENST00000585229 FSIP2Q5CZC0 6907 aa4.06□□□□□ -1.76
SMCHD1-212ENST00000585229 LCE3CQ5T5A8 94 aa4.06□□□□□ -1.76
SMCHD1-212ENST00000585229 FCGBPQ9Y6R7 5405 aaPredicted RBP4.01□□□□□ -1.77
SMCHD1-212ENST00000585229 C10orf95Q9H7T3 257 aa4.01□□□□□ -1.77
SMCHD1-212ENST00000585229 PRO0628Q9UI54 55 aa3.98□□□□□ -1.77
SMCHD1-212ENST00000585229 ROMO1P60602 79 aa3.93□□□□□ -1.78
SMCHD1-212ENST00000585229 KRTAP9-6A8MVA2 160 aa3.9□□□□□ -1.79
SMCHD1-212ENST00000585229 TNP1P09430 55 aa3.9□□□□□ -1.79
SMCHD1-212ENST00000585229 KRTAP25-1Q3LHN0 102 aa3.9□□□□□ -1.79
SMCHD1-212ENST00000585229 PMAIP1Q13794 54 aa3.88□□□□□ -1.79
SMCHD1-212ENST00000585229 LCE3AQ5TA76 89 aa3.77□□□□□ -1.81
SMCHD1-212ENST00000585229 KMT2DO14686 5537 aa3.76□□□□□ -1.81
SMCHD1-212ENST00000585229 MACF1Q9UPN3 7388 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-212ENST00000585229 PP632Q6XCG6 107 aa3.73□□□□□ -1.81
SMCHD1-212ENST00000585229 KRTAP8-1Q8IUC2 63 aa3.73□□□□□ -1.81
SMCHD1-212ENST00000585229 KTN1-AS1Q86SY8 53 aa3.72□□□□□ -1.81
SMCHD1-212ENST00000585229 LCE3EQ5T5B0 92 aa3.71□□□□□ -1.82
SMCHD1-212ENST00000585229 KRTAP5-9P26371 169 aa3.7□□□□□ -1.82
SMCHD1-212ENST00000585229 KRTAP6-3Q3LI67 103 aa3.69□□□□□ -1.82
SMCHD1-212ENST00000585229 KRTAP19-7Q3SYF9 63 aa3.69□□□□□ -1.82
SMCHD1-212ENST00000585229 KRTAP19-5Q3LI72 72 aa3.66□□□□□ -1.82
SMCHD1-212ENST00000585229 KRTAP5-1Q6L8H4 278 aa3.64□□□□□ -1.83
SMCHD1-212ENST00000585229 MT1EP04732 61 aa3.63□□□□□ -1.83
SMCHD1-212ENST00000585229 KRTAP12-3P60328 96 aa3.63□□□□□ -1.83
SMCHD1-212ENST00000585229 SYNE2Q8WXH0 6885 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-212ENST00000585229 SPRR2FQ96RM1 72 aa3.62□□□□□ -1.83
SMCHD1-212ENST00000585229 MUC12Q9UKN1 5478 aa3.57□□□□□ -1.84
SMCHD1-212ENST00000585229 MT1LQ93083 61 aa3.54□□□□□ -1.84
SMCHD1-212ENST00000585229 KRTAP19-3Q7Z4W3 81 aa3.52□□□□□ -1.85
SMCHD1-212ENST00000585229 KRTAP5-4Q6L8H1 288 aa3.51□□□□□ -1.85
SMCHD1-212ENST00000585229 MDN1Q9NU22 5596 aa3.51□□□□□ -1.85
SMCHD1-212ENST00000585229 KRTAP4-4Q9BYR3 166 aa3.5□□□□□ -1.85
SMCHD1-212ENST00000585229 MT1GP13640 62 aa3.47□□□□□ -1.85
SMCHD1-212ENST00000585229 SPRR2EP22531 72 aa3.47□□□□□ -1.85
SMCHD1-212ENST00000585229 SPRR2BP35325 72 aa3.47□□□□□ -1.85
SMCHD1-212ENST00000585229 SPRR2AP35326 72 aa3.47□□□□□ -1.85
SMCHD1-212ENST00000585229 MT1MQ8N339 61 aa3.42□□□□□ -1.86
SMCHD1-212ENST00000585229 NEBP20929 6669 aa3.41□□□□□ -1.86
SMCHD1-212ENST00000585229 SPRR2DP22532 72 aa3.36□□□□□ -1.87
SMCHD1-212ENST00000585229 KRTAP4-3Q9BYR4 195 aa3.3□□□□□ -1.88
SMCHD1-212ENST00000585229 SPRR5A0A1B0GTR4 108 aa3.28□□□□□ -1.88
SMCHD1-212ENST00000585229 KRTAP2-3P0C7H8 128 aa3.23□□□□□ -1.89
SMCHD1-212ENST00000585229 KRTAP2-4Q9BYR9 128 aa3.23□□□□□ -1.89
SMCHD1-212ENST00000585229 KRTAP20-1Q3LI63 56 aa3.21□□□□□ -1.9
SMCHD1-212ENST00000585229 DSTQ03001 7570 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-212ENST00000585229 KRTAP2-1Q9BYU5 128 aa3.16□□□□□ -1.9
SMCHD1-212ENST00000585229 OBSCNQ5VST9 7968 aa3.14□□□□□ -1.91
SMCHD1-212ENST00000585229 KRTAP5-5Q701N2 237 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-212ENST00000585229 LCE3DQ9BYE3 92 aa3.04□□□□□ -1.92
SMCHD1-212ENST00000585229 MT1AP04731 61 aa3.01□□□□□ -1.93
SMCHD1-212ENST00000585229 LUZP6Q538Z0 58 aa3□□□□□ -1.93
SMCHD1-212ENST00000585229 KRTAP5-2Q701N4 177 aa2.98□□□□□ -1.93
SMCHD1-212ENST00000585229 KRTAP6-1Q3LI64 71 aa2.96□□□□□ -1.94
SMCHD1-212ENST00000585229 KRTAP12-4P60329 112 aa2.9□□□□□ -1.95
SMCHD1-212ENST00000585229 SYNE1Q8NF91 8797 aaKnown RBP2.88□□□□□ -1.95
SMCHD1-212ENST00000585229 MT4P47944 62 aa2.88□□□□□ -1.95
SMCHD1-212ENST00000585229 HMCN1Q96RW7 5635 aa2.88□□□□□ -1.95
SMCHD1-212ENST00000585229 LCE1CQ5T751 118 aa2.85□□□□□ -1.95
SMCHD1-212ENST00000585229 LCE1BQ5T7P3 118 aa2.85□□□□□ -1.95
SMCHD1-212ENST00000585229 KRTAP20-2Q3LI61 65 aa2.84□□□□□ -1.95
SMCHD1-212ENST00000585229 KRTAP6-2Q3LI66 62 aa2.74□□□□□ -1.97
SMCHD1-212ENST00000585229 AHNAK2Q8IVF2 5795 aa2.62□□□□□ -1.99
SMCHD1-212ENST00000585229 KRTAP5-10Q6L8G5 202 aa2.53□□□□□ -2
SMCHD1-212ENST00000585229 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
SMCHD1-212ENST00000585229 GPR98Q8WXG9 6306 aa2.45□□□□□ -2.02
SMCHD1-212ENST00000585229 KRTAP5-7Q6L8G8 165 aa2.41□□□□□ -2.02
SMCHD1-212ENST00000585229 INE1O15225 51 aa2.37□□□□□ -2.03
SMCHD1-212ENST00000585229 MUC5ACP98088 5654 aa2.33□□□□□ -2.04
SMCHD1-212ENST00000585229 MUC19Q7Z5P9 8384 aa2.3□□□□□ -2.04
SMCHD1-212ENST00000585229 MUC5BQ9HC84 5762 aaPredicted RBP2.13□□□□□ -2.07
SMCHD1-212ENST00000585229 KRTAP21-2Q3LI59 83 aa2.06□□□□□ -2.08
SMCHD1-212ENST00000585229 PRM1P04553 51 aa2.03□□□□□ -2.08
SMCHD1-212ENST00000585229 AHNAKQ09666 5890 aaKnown RBP2.03□□□□□ -2.08
SMCHD1-212ENST00000585229 PHGR1C9JFL3 82 aa1.71□□□□□ -2.14
SMCHD1-212ENST00000585229 KRTAP21-1Q3LI58 79 aa1.25□□□□□ -2.21
SMCHD1-212ENST00000585229 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 44.1 ms