RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	UQCR11	O14957	56 aa		4.76	□□□□□ -1.65
SREBF1-223	ENST00000584760	LCE4A	Q5TA78	99 aa		4.75	□□□□□ -1.65
SREBF1-223	ENST00000584760	MT1L	Q93083	61 aa		4.75	□□□□□ -1.65
SREBF1-223	ENST00000584760	PP632	Q6XCG6	107 aa		4.73	□□□□□ -1.65
SREBF1-223	ENST00000584760	KRTAP5-10	Q6L8G5	202 aa		4.72	□□□□□ -1.65
SREBF1-223	ENST00000584760	MT1M	Q8N339	61 aa		4.72	□□□□□ -1.65
SREBF1-223	ENST00000584760	AHNAK2	Q8IVF2	5795 aa		4.71	□□□□□ -1.66
SREBF1-223	ENST00000584760	MIR22HG	Q0VDD5	57 aa		4.66	□□□□□ -1.66
SREBF1-223	ENST00000584760	KRTAP4-6	Q9BYQ5	205 aa		4.62	□□□□□ -1.67
SREBF1-223	ENST00000584760		V9GYY9	64 aa		4.61	□□□□□ -1.67
SREBF1-223	ENST00000584760	KRTAP12-3	P60328	96 aa		4.6	□□□□□ -1.67
SREBF1-223	ENST00000584760		Q1T7F1	81 aa		4.6	□□□□□ -1.67
SREBF1-223	ENST00000584760	KRTAP4-3	Q9BYR4	195 aa		4.6	□□□□□ -1.67
SREBF1-223	ENST00000584760	PSPHP1	O15172	72 aa		4.59	□□□□□ -1.67
SREBF1-223	ENST00000584760	KRTAP5-7	Q6L8G8	165 aa		4.59	□□□□□ -1.67
SREBF1-223	ENST00000584760	KRTAP5-4	Q6L8H1	288 aa		4.58	□□□□□ -1.68
SREBF1-223	ENST00000584760		H3BS24	57 aa		4.56	□□□□□ -1.68
SREBF1-223	ENST00000584760	KRTAP25-1	Q3LHN0	102 aa		4.56	□□□□□ -1.68
SREBF1-223	ENST00000584760		K7ERS5	55 aa		4.54	□□□□□ -1.68
SREBF1-223	ENST00000584760	KRTAP5-3	Q6L8H2	238 aa		4.53	□□□□□ -1.68
SREBF1-223	ENST00000584760	KRTAP4-7	Q9BYR0	210 aa		4.5	□□□□□ -1.69
SREBF1-223	ENST00000584760	SPRR5	A0A1B0GTR4	108 aa		4.47	□□□□□ -1.69
SREBF1-223	ENST00000584760		A6NED7	52 aa		4.43	□□□□□ -1.7
SREBF1-223	ENST00000584760	KRTAP23-1	A1A580	65 aa		4.4	□□□□□ -1.71
SREBF1-223	ENST00000584760	RPS28	P62857	69 aa	Known RBP	4.37	□□□□□ -1.71
SREBF1-223	ENST00000584760	KRTAP20-2	Q3LI61	65 aa		4.37	□□□□□ -1.71
SREBF1-223	ENST00000584760	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.35	□□□□□ -1.71
SREBF1-223	ENST00000584760	KRTAP19-4	Q3LI73	84 aa		4.33	□□□□□ -1.72
SREBF1-223	ENST00000584760	PCP4	P48539	62 aa		4.32	□□□□□ -1.72
SREBF1-223	ENST00000584760	CDC42SE1	Q9NRR8	79 aa		4.32	□□□□□ -1.72
SREBF1-223	ENST00000584760	KRTAP15-1	Q3LI76	137 aa		4.31	□□□□□ -1.72
SREBF1-223	ENST00000584760	LOC100996750	A0A140TA64	210 aa		4.27	□□□□□ -1.73
SREBF1-223	ENST00000584760	ROMO1	P60602	79 aa		4.26	□□□□□ -1.73
SREBF1-223	ENST00000584760	LCE3C	Q5T5A8	94 aa		4.24	□□□□□ -1.73
SREBF1-223	ENST00000584760	KRTAP12-4	P60329	112 aa		4.23	□□□□□ -1.73
SREBF1-223	ENST00000584760	SYNE1	Q8NF91	8797 aa	Known RBP	4.17	□□□□□ -1.74
SREBF1-223	ENST00000584760	KRTAP4-11	Q9BYQ6	195 aa		4.09	□□□□□ -1.75
SREBF1-223	ENST00000584760	MT1A	P04731	61 aa		4.04	□□□□□ -1.76
SREBF1-223	ENST00000584760	KRTAP9-6	A8MVA2	160 aa		4.03	□□□□□ -1.76
SREBF1-223	ENST00000584760	KRTAP6-1	Q3LI64	71 aa		4.01	□□□□□ -1.77
SREBF1-223	ENST00000584760	AHNAK	Q09666	5890 aa	Known RBP	4.01	□□□□□ -1.77
SREBF1-223	ENST00000584760	MUC5AC	P98088	5654 aa		3.99	□□□□□ -1.77
SREBF1-223	ENST00000584760	KRTAP5-8	O75690	187 aa		3.97	□□□□□ -1.77
SREBF1-223	ENST00000584760	SVIP	Q8NHG7	77 aa		3.96	□□□□□ -1.78
SREBF1-223	ENST00000584760	KRTAP5-2	Q701N4	177 aa		3.95	□□□□□ -1.78
SREBF1-223	ENST00000584760	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.92	□□□□□ -1.78
SREBF1-223	ENST00000584760	KRTAP9-4	Q9BYQ2	154 aa		3.88	□□□□□ -1.79
SREBF1-223	ENST00000584760	BRK1	Q8WUW1	75 aa		3.83	□□□□□ -1.8
SREBF1-223	ENST00000584760	KRTAP9-9	Q9BYP9	154 aa		3.83	□□□□□ -1.8
SREBF1-223	ENST00000584760	KRTAP6-2	Q3LI66	62 aa		3.82	□□□□□ -1.8
SREBF1-223	ENST00000584760	OBSCN	Q5VST9	7968 aa		3.79	□□□□□ -1.8
SREBF1-223	ENST00000584760	KRTAP4-12	Q9BQ66	201 aa		3.75	□□□□□ -1.81
SREBF1-223	ENST00000584760	MT3	P25713	68 aa		3.67	□□□□□ -1.82
SREBF1-223	ENST00000584760	KRTAP5-1	Q6L8H4	278 aa		3.61	□□□□□ -1.83
SREBF1-223	ENST00000584760	PMAIP1	Q13794	54 aa		3.58	□□□□□ -1.84
SREBF1-223	ENST00000584760	PRAC1	Q96KF2	57 aa		3.48	□□□□□ -1.85
SREBF1-223	ENST00000584760	LCE1E	Q5T753	118 aa		3.38	□□□□□ -1.87
SREBF1-223	ENST00000584760		A0A0A0MQY5	61 aa		3.32	□□□□□ -1.88
SREBF1-223	ENST00000584760	PRO0628	Q9UI54	55 aa		3.32	□□□□□ -1.88
SREBF1-223	ENST00000584760	LCE1B	Q5T7P3	118 aa		3.21	□□□□□ -1.9
SREBF1-223	ENST00000584760	KRTAP4-2	Q9BYR5	136 aa		3.21	□□□□□ -1.9
SREBF1-223	ENST00000584760	KTN1-AS1	Q86SY8	53 aa		3.2	□□□□□ -1.9
SREBF1-223	ENST00000584760	LCE1C	Q5T751	118 aa		3.14	□□□□□ -1.91
SREBF1-223	ENST00000584760	LCE3D	Q9BYE3	92 aa		3.05	□□□□□ -1.92
SREBF1-223	ENST00000584760	LUZP6	Q538Z0	58 aa		2.9	□□□□□ -1.95
SREBF1-223	ENST00000584760	LCE3E	Q5T5B0	92 aa		2.88	□□□□□ -1.95
SREBF1-223	ENST00000584760	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.88	□□□□□ -1.95
SREBF1-223	ENST00000584760	KRTAP5-11	Q6L8G4	156 aa		2.86	□□□□□ -1.95
SREBF1-223	ENST00000584760	LCE1F	Q5T754	118 aa		2.82	□□□□□ -1.96
SREBF1-223	ENST00000584760	PHGR1	C9JFL3	82 aa		2.79	□□□□□ -1.96
SREBF1-223	ENST00000584760	KRTAP21-2	Q3LI59	83 aa		2.65	□□□□□ -1.99
SREBF1-223	ENST00000584760	NDUFAF8	A1L188	74 aa		2.63	□□□□□ -1.99
SREBF1-223	ENST00000584760	KRTAP4-4	Q9BYR3	166 aa		2.42	□□□□□ -2.02
SREBF1-223	ENST00000584760	MUC19	Q7Z5P9	8384 aa		2.36	□□□□□ -2.03
SREBF1-223	ENST00000584760	PRM1	P04553	51 aa		2.19	□□□□□ -2.06
SREBF1-223	ENST00000584760	KRTAP21-1	Q3LI58	79 aa		2.11	□□□□□ -2.07
SREBF1-223	ENST00000584760	INE1	O15225	51 aa		1.88	□□□□□ -2.11
SREBF1-223	ENST00000584760	MUC16	Q8WXI7	14507 aa		1.63	□□□□□ -2.15

Retrieved 78 of 20,778 RNA–protein pairs in 50.7 ms