RNA–Protein interactions for RNA: ENST00000584112.1

CCDC47-206, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2

Gene CCDC47, Length 588 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-206ENST00000584112 PRAC1Q96KF2 57 aa4.18□□□□□ -1.74
CCDC47-206ENST00000584112 COX7CP15954 63 aa4.17□□□□□ -1.74
CCDC47-206ENST00000584112 A0A1B0GU33 70 aa4.16□□□□□ -1.74
CCDC47-206ENST00000584112 KRTAP5-4Q6L8H1 288 aa4.16□□□□□ -1.74
CCDC47-206ENST00000584112 SPATA8Q6RVD6 105 aa4.16□□□□□ -1.74
CCDC47-206ENST00000584112 KRTAP19-7Q3SYF9 63 aa4.15□□□□□ -1.75
CCDC47-206ENST00000584112 SPINT4Q6UDR6 99 aa4.14□□□□□ -1.75
CCDC47-206ENST00000584112 MT1EP04732 61 aa4.13□□□□□ -1.75
CCDC47-206ENST00000584112 H7BZZ5 65 aa4.12□□□□□ -1.75
CCDC47-206ENST00000584112 KRTAP19-3Q7Z4W3 81 aa4.12□□□□□ -1.75
CCDC47-206ENST00000584112 KRTAP12-1P59990 96 aa4.1□□□□□ -1.75
CCDC47-206ENST00000584112 SMIM26A0A096LP01 95 aa4.07□□□□□ -1.76
CCDC47-206ENST00000584112 CYSTM1Q9H1C7 97 aa4.07□□□□□ -1.76
CCDC47-206ENST00000584112 A0A1B0GU69 56 aa4.06□□□□□ -1.76
CCDC47-206ENST00000584112 KRTAP19-5Q3LI72 72 aa4.04□□□□□ -1.76
CCDC47-206ENST00000584112 MT1GP13640 62 aa4.03□□□□□ -1.76
CCDC47-206ENST00000584112 KRTAP20-2Q3LI61 65 aa4.03□□□□□ -1.76
CCDC47-206ENST00000584112 PP632Q6XCG6 107 aa4.02□□□□□ -1.77
CCDC47-206ENST00000584112 MT3P25713 68 aa4.01□□□□□ -1.77
CCDC47-206ENST00000584112 NDUFAF8A1L188 74 aa3.99□□□□□ -1.77
CCDC47-206ENST00000584112 A8MU10 97 aa3.98□□□□□ -1.77
CCDC47-206ENST00000584112 ANAPC13Q9BS18 74 aa3.98□□□□□ -1.77
CCDC47-206ENST00000584112 TNP1P09430 55 aa3.96□□□□□ -1.78
CCDC47-206ENST00000584112 KRTAP5-8O75690 187 aa3.95□□□□□ -1.78
CCDC47-206ENST00000584112 PRR15LQ9BU68 103 aa3.95□□□□□ -1.78
CCDC47-206ENST00000584112 MT1MQ8N339 61 aa3.94□□□□□ -1.78
CCDC47-206ENST00000584112 ATP5EP56381 51 aaPredicted RBP3.93□□□□□ -1.78
CCDC47-206ENST00000584112 MT1LQ93083 61 aa3.93□□□□□ -1.78
CCDC47-206ENST00000584112 LCE3AQ5TA76 89 aa3.92□□□□□ -1.78
CCDC47-206ENST00000584112 C10orf95Q9H7T3 257 aa3.91□□□□□ -1.78
CCDC47-206ENST00000584112 CCDC179H3BU77 68 aa3.88□□□□□ -1.79
CCDC47-206ENST00000584112 LINC01558Q9Y6Z2 57 aa3.85□□□□□ -1.79
CCDC47-206ENST00000584112 KRTAP4-3Q9BYR4 195 aa3.83□□□□□ -1.8
CCDC47-206ENST00000584112 UQCR11O14957 56 aa3.8□□□□□ -1.8
CCDC47-206ENST00000584112 KRTAP12-3P60328 96 aa3.79□□□□□ -1.8
CCDC47-206ENST00000584112 TMEM258P61165 79 aa3.77□□□□□ -1.81
CCDC47-206ENST00000584112 KRTAP25-1Q3LHN0 102 aa3.7□□□□□ -1.82
CCDC47-206ENST00000584112 MIR22HGQ0VDD5 57 aa3.69□□□□□ -1.82
CCDC47-206ENST00000584112 K7ERS5 55 aa3.68□□□□□ -1.82
CCDC47-206ENST00000584112 KRTAP5-2Q701N4 177 aa3.68□□□□□ -1.82
CCDC47-206ENST00000584112 KRTAP12-4P60329 112 aa3.65□□□□□ -1.83
CCDC47-206ENST00000584112 SYNE1Q8NF91 8797 aaKnown RBP3.64□□□□□ -1.83
CCDC47-206ENST00000584112 KRTAP5-5Q701N2 237 aaPredicted RBP3.61□□□□□ -1.83
CCDC47-206ENST00000584112 V9GYY9 64 aa3.61□□□□□ -1.83
CCDC47-206ENST00000584112 PSPHP1O15172 72 aa3.57□□□□□ -1.84
CCDC47-206ENST00000584112 Q1T7F1 81 aa3.54□□□□□ -1.84
CCDC47-206ENST00000584112 LCE1FQ5T754 118 aa3.51□□□□□ -1.85
CCDC47-206ENST00000584112 OBSCNQ5VST9 7968 aa3.48□□□□□ -1.85
CCDC47-206ENST00000584112 LCE3CQ5T5A8 94 aa3.48□□□□□ -1.85
CCDC47-206ENST00000584112 A6NED7 52 aa3.46□□□□□ -1.86
CCDC47-206ENST00000584112 CDC42SE1Q9NRR8 79 aa3.45□□□□□ -1.86
CCDC47-206ENST00000584112 ROMO1P60602 79 aa3.38□□□□□ -1.87
CCDC47-206ENST00000584112 RPS28P62857 69 aaKnown RBP3.38□□□□□ -1.87
CCDC47-206ENST00000584112 MT1AP04731 61 aa3.36□□□□□ -1.87
CCDC47-206ENST00000584112 KRTAP6-1Q3LI64 71 aa3.33□□□□□ -1.88
CCDC47-206ENST00000584112 KRTAP5-1Q6L8H4 278 aa3.33□□□□□ -1.88
CCDC47-206ENST00000584112 LCE1EQ5T753 118 aa3.28□□□□□ -1.88
CCDC47-206ENST00000584112 KRTAP9-6A8MVA2 160 aa3.25□□□□□ -1.89
CCDC47-206ENST00000584112 KRTAP6-2Q3LI66 62 aa3.19□□□□□ -1.9
CCDC47-206ENST00000584112 KRTAP5-11Q6L8G4 156 aa3.05□□□□□ -1.92
CCDC47-206ENST00000584112 LCE3EQ5T5B0 92 aa3.01□□□□□ -1.93
CCDC47-206ENST00000584112 PHGR1C9JFL3 82 aa2.95□□□□□ -1.94
CCDC47-206ENST00000584112 BRK1Q8WUW1 75 aa2.87□□□□□ -1.95
CCDC47-206ENST00000584112 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.81□□□□□ -1.96
CCDC47-206ENST00000584112 PRO0628Q9UI54 55 aa2.8□□□□□ -1.96
CCDC47-206ENST00000584112 LCE1BQ5T7P3 118 aa2.76□□□□□ -1.97
CCDC47-206ENST00000584112 PMAIP1Q13794 54 aa2.69□□□□□ -1.98
CCDC47-206ENST00000584112 LUZP6Q538Z0 58 aa2.68□□□□□ -1.98
CCDC47-206ENST00000584112 LCE1CQ5T751 118 aa2.64□□□□□ -1.99
CCDC47-206ENST00000584112 LCE3DQ9BYE3 92 aa2.57□□□□□ -2
CCDC47-206ENST00000584112 KTN1-AS1Q86SY8 53 aa2.56□□□□□ -2
CCDC47-206ENST00000584112 KRTAP4-4Q9BYR3 166 aa2.34□□□□□ -2.03
CCDC47-206ENST00000584112 MUC19Q7Z5P9 8384 aa2.22□□□□□ -2.05
CCDC47-206ENST00000584112 KRTAP21-1Q3LI58 79 aa2.2□□□□□ -2.06
CCDC47-206ENST00000584112 KRTAP21-2Q3LI59 83 aa2.19□□□□□ -2.06
CCDC47-206ENST00000584112 INE1O15225 51 aa1.76□□□□□ -2.13
CCDC47-206ENST00000584112 PRM1P04553 51 aa1.71□□□□□ -2.14
CCDC47-206ENST00000584112 MUC16Q8WXI7 14507 aa1.55□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 126.5 ms