RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 KRTAP5-4Q6L8H1 288 aa7.83□□□□□ -1.16
SHMT1-210ENST00000583780 KRTAP19-5Q3LI72 72 aa7.82□□□□□ -1.16
SHMT1-210ENST00000583780 KRTAP4-6Q9BYQ5 205 aa7.81□□□□□ -1.16
SHMT1-210ENST00000583780 PP632Q6XCG6 107 aa7.8□□□□□ -1.16
SHMT1-210ENST00000583780 MT1MQ8N339 61 aa7.8□□□□□ -1.16
SHMT1-210ENST00000583780 V9GYY9 64 aa7.75□□□□□ -1.17
SHMT1-210ENST00000583780 C10orf95Q9H7T3 257 aa7.74□□□□□ -1.17
SHMT1-210ENST00000583780 PSPHP1O15172 72 aa7.73□□□□□ -1.17
SHMT1-210ENST00000583780 KRTAP5-7Q6L8G8 165 aa7.73□□□□□ -1.17
SHMT1-210ENST00000583780 MIR22HGQ0VDD5 57 aa7.72□□□□□ -1.17
SHMT1-210ENST00000583780 Q1T7F1 81 aa7.7□□□□□ -1.18
SHMT1-210ENST00000583780 MT1LQ93083 61 aa7.69□□□□□ -1.18
SHMT1-210ENST00000583780 KRTAP4-3Q9BYR4 195 aa7.69□□□□□ -1.18
SHMT1-210ENST00000583780 TNP1P09430 55 aa7.67□□□□□ -1.18
SHMT1-210ENST00000583780 PCP4P48539 62 aa7.67□□□□□ -1.18
SHMT1-210ENST00000583780 KRTAP5-3Q6L8H2 238 aa7.65□□□□□ -1.18
SHMT1-210ENST00000583780 LCE3AQ5TA76 89 aa7.56□□□□□ -1.2
SHMT1-210ENST00000583780 K7ERS5 55 aa7.54□□□□□ -1.2
SHMT1-210ENST00000583780 A6NED7 52 aa7.48□□□□□ -1.21
SHMT1-210ENST00000583780 RPS28P62857 69 aaKnown RBP7.47□□□□□ -1.21
SHMT1-210ENST00000583780 KRTAP20-2Q3LI61 65 aa7.4□□□□□ -1.22
SHMT1-210ENST00000583780 KRTAP25-1Q3LHN0 102 aa7.34□□□□□ -1.23
SHMT1-210ENST00000583780 KRTAP4-7Q9BYR0 210 aa7.34□□□□□ -1.23
SHMT1-210ENST00000583780 SPRR5A0A1B0GTR4 108 aa7.33□□□□□ -1.24
SHMT1-210ENST00000583780 KRTAP12-3P60328 96 aa7.26□□□□□ -1.25
SHMT1-210ENST00000583780 KRTAP5-5Q701N2 237 aaPredicted RBP7.25□□□□□ -1.25
SHMT1-210ENST00000583780 CDC42SE1Q9NRR8 79 aa7.16□□□□□ -1.26
SHMT1-210ENST00000583780 KRTAP12-4P60329 112 aa7.13□□□□□ -1.27
SHMT1-210ENST00000583780 SYNE1Q8NF91 8797 aaKnown RBP7.09□□□□□ -1.28
SHMT1-210ENST00000583780 ROMO1P60602 79 aa7.06□□□□□ -1.28
SHMT1-210ENST00000583780 KRTAP23-1A1A580 65 aa7.03□□□□□ -1.28
SHMT1-210ENST00000583780 LOC100996750A0A140TA64 210 aa6.98□□□□□ -1.29
SHMT1-210ENST00000583780 KRTAP4-11Q9BYQ6 195 aa6.91□□□□□ -1.3
SHMT1-210ENST00000583780 KRTAP15-1Q3LI76 137 aa6.86□□□□□ -1.31
SHMT1-210ENST00000583780 KRTAP19-4Q3LI73 84 aa6.77□□□□□ -1.33
SHMT1-210ENST00000583780 KRTAP5-2Q701N4 177 aa6.75□□□□□ -1.33
SHMT1-210ENST00000583780 KRTAP5-8O75690 187 aa6.73□□□□□ -1.33
SHMT1-210ENST00000583780 LCE3CQ5T5A8 94 aa6.7□□□□□ -1.34
SHMT1-210ENST00000583780 BRK1Q8WUW1 75 aa6.69□□□□□ -1.34
SHMT1-210ENST00000583780 MUC5ACP98088 5654 aa6.62□□□□□ -1.35
SHMT1-210ENST00000583780 MUC5BQ9HC84 5762 aaPredicted RBP6.59□□□□□ -1.35
SHMT1-210ENST00000583780 AHNAKQ09666 5890 aaKnown RBP6.57□□□□□ -1.36
SHMT1-210ENST00000583780 KRTAP6-1Q3LI64 71 aa6.55□□□□□ -1.36
SHMT1-210ENST00000583780 MT1AP04731 61 aa6.52□□□□□ -1.37
SHMT1-210ENST00000583780 OBSCNQ5VST9 7968 aa6.45□□□□□ -1.38
SHMT1-210ENST00000583780 KRTAP9-9Q9BYP9 154 aa6.41□□□□□ -1.38
SHMT1-210ENST00000583780 KRTAP9-4Q9BYQ2 154 aa6.4□□□□□ -1.38
SHMT1-210ENST00000583780 KRTAP6-2Q3LI66 62 aa6.36□□□□□ -1.39
SHMT1-210ENST00000583780 KRTAP9-6A8MVA2 160 aa6.31□□□□□ -1.4
SHMT1-210ENST00000583780 PMAIP1Q13794 54 aa6.27□□□□□ -1.41
SHMT1-210ENST00000583780 KRTAP5-1Q6L8H4 278 aa6.18□□□□□ -1.42
SHMT1-210ENST00000583780 PRAC1Q96KF2 57 aa6.04□□□□□ -1.44
SHMT1-210ENST00000583780 MT3P25713 68 aa5.97□□□□□ -1.45
SHMT1-210ENST00000583780 PRO0628Q9UI54 55 aa5.96□□□□□ -1.46
SHMT1-210ENST00000583780 KTN1-AS1Q86SY8 53 aa5.68□□□□□ -1.5
SHMT1-210ENST00000583780 LCE1EQ5T753 118 aa5.66□□□□□ -1.5
SHMT1-210ENST00000583780 SVIPQ8NHG7 77 aa5.5□□□□□ -1.53
SHMT1-210ENST00000583780 KRTAP4-2Q9BYR5 136 aa5.44□□□□□ -1.54
SHMT1-210ENST00000583780 LCE1BQ5T7P3 118 aa5.35□□□□□ -1.55
SHMT1-210ENST00000583780 LCE1CQ5T751 118 aa5.26□□□□□ -1.57
SHMT1-210ENST00000583780 KRTAP4-12Q9BQ66 201 aa5.15□□□□□ -1.59
SHMT1-210ENST00000583780 LUZP6Q538Z0 58 aa5.04□□□□□ -1.6
SHMT1-210ENST00000583780 KRTAP5-11Q6L8G4 156 aa4.88□□□□□ -1.63
SHMT1-210ENST00000583780 LCE3DQ9BYE3 92 aa4.88□□□□□ -1.63
SHMT1-210ENST00000583780 LCE1FQ5T754 118 aa4.82□□□□□ -1.64
SHMT1-210ENST00000583780 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.72□□□□□ -1.65
SHMT1-210ENST00000583780 PHGR1C9JFL3 82 aa4.63□□□□□ -1.67
SHMT1-210ENST00000583780 LCE3EQ5T5B0 92 aa4.63□□□□□ -1.67
SHMT1-210ENST00000583780 KRTAP21-2Q3LI59 83 aa4.35□□□□□ -1.71
SHMT1-210ENST00000583780 NDUFAF8A1L188 74 aa4.26□□□□□ -1.73
SHMT1-210ENST00000583780 KRTAP4-4Q9BYR3 166 aa4.07□□□□□ -1.76
SHMT1-210ENST00000583780 MUC19Q7Z5P9 8384 aa4.01□□□□□ -1.77
SHMT1-210ENST00000583780 PRM1P04553 51 aa3.64□□□□□ -1.83
SHMT1-210ENST00000583780 A0A0A0MQY5 61 aa3.58□□□□□ -1.84
SHMT1-210ENST00000583780 KRTAP21-1Q3LI58 79 aa3.5□□□□□ -1.85
SHMT1-210ENST00000583780 INE1O15225 51 aa3.42□□□□□ -1.86
SHMT1-210ENST00000583780 H3BS24 57 aa2.87□□□□□ -1.95
SHMT1-210ENST00000583780 MUC16Q8WXI7 14507 aa2.84□□□□□ -1.95
Retrieved 78 of 20,778 RNA–protein pairs in 60.8 ms