RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 SYNE2Q8WXH0 6885 aaKnown RBP5.68□□□□□ -1.5
SS18-215ENST00000580642 KRTAP6-3Q3LI67 103 aa5.67□□□□□ -1.5
SS18-215ENST00000580642 KRTAP19-5Q3LI72 72 aa5.67□□□□□ -1.5
SS18-215ENST00000580642 KRTAP19-7Q3SYF9 63 aa5.67□□□□□ -1.5
SS18-215ENST00000580642 MT1EP04732 61 aa5.6□□□□□ -1.51
SS18-215ENST00000580642 SPRR2FQ96RM1 72 aa5.59□□□□□ -1.51
SS18-215ENST00000580642 KRTAP19-4Q3LI73 84 aa5.58□□□□□ -1.52
SS18-215ENST00000580642 SVIPQ8NHG7 77 aa5.55□□□□□ -1.52
SS18-215ENST00000580642 KRTAP15-1Q3LI76 137 aa5.54□□□□□ -1.52
SS18-215ENST00000580642 KRTAP4-9Q9BYQ8 210 aa5.54□□□□□ -1.52
SS18-215ENST00000580642 KRTAP4-2Q9BYR5 136 aa5.48□□□□□ -1.53
SS18-215ENST00000580642 MT1LQ93083 61 aa5.45□□□□□ -1.54
SS18-215ENST00000580642 KRTAP19-3Q7Z4W3 81 aa5.44□□□□□ -1.54
SS18-215ENST00000580642 MUC12Q9UKN1 5478 aa5.44□□□□□ -1.54
SS18-215ENST00000580642 MT1GP13640 62 aa5.41□□□□□ -1.54
SS18-215ENST00000580642 LCE1AQ5T7P2 110 aa5.4□□□□□ -1.54
SS18-215ENST00000580642 LCE5AQ5TCM9 118 aa5.37□□□□□ -1.55
SS18-215ENST00000580642 MDN1Q9NU22 5596 aa5.37□□□□□ -1.55
SS18-215ENST00000580642 SPRR2EP22531 72 aa5.36□□□□□ -1.55
SS18-215ENST00000580642 SPRR2BP35325 72 aa5.36□□□□□ -1.55
SS18-215ENST00000580642 SPRR2AP35326 72 aa5.36□□□□□ -1.55
SS18-215ENST00000580642 LCE4AQ5TA78 99 aa5.35□□□□□ -1.55
SS18-215ENST00000580642 NEBP20929 6669 aa5.31□□□□□ -1.56
SS18-215ENST00000580642 KRTAP4-11Q9BYQ6 195 aa5.31□□□□□ -1.56
SS18-215ENST00000580642 LCE3CQ5T5A8 94 aa5.3□□□□□ -1.56
SS18-215ENST00000580642 MT1MQ8N339 61 aa5.28□□□□□ -1.56
SS18-215ENST00000580642 KRTAP5-3Q6L8H2 238 aa5.25□□□□□ -1.57
SS18-215ENST00000580642 SPRR2DP22532 72 aa5.18□□□□□ -1.58
SS18-215ENST00000580642 SPRR5A0A1B0GTR4 108 aa5.15□□□□□ -1.59
SS18-215ENST00000580642 KRTAP20-1Q3LI63 56 aa5.11□□□□□ -1.59
SS18-215ENST00000580642 KRTAP4-3Q9BYR4 195 aa5.04□□□□□ -1.6
SS18-215ENST00000580642 KRTAP2-3P0C7H8 128 aa5.02□□□□□ -1.61
SS18-215ENST00000580642 KRTAP2-4Q9BYR9 128 aa5.02□□□□□ -1.61
SS18-215ENST00000580642 DSTQ03001 7570 aaKnown RBP4.95□□□□□ -1.62
SS18-215ENST00000580642 KRTAP9-6A8MVA2 160 aa4.92□□□□□ -1.62
SS18-215ENST00000580642 LUZP6Q538Z0 58 aa4.9□□□□□ -1.63
SS18-215ENST00000580642 KRTAP2-2Q9BYT5 123 aa4.88□□□□□ -1.63
SS18-215ENST00000580642 KRTAP2-1Q9BYU5 128 aa4.88□□□□□ -1.63
SS18-215ENST00000580642 KRTAP5-5Q701N2 237 aaPredicted RBP4.8□□□□□ -1.64
SS18-215ENST00000580642 KRTAP5-4Q6L8H1 288 aa4.71□□□□□ -1.66
SS18-215ENST00000580642 MT1AP04731 61 aa4.67□□□□□ -1.66
SS18-215ENST00000580642 KRTAP12-4P60329 112 aa4.55□□□□□ -1.68
SS18-215ENST00000580642 KRTAP6-1Q3LI64 71 aa4.55□□□□□ -1.68
SS18-215ENST00000580642 NDUFAF8A1L188 74 aa4.52□□□□□ -1.69
SS18-215ENST00000580642 SYNE1Q8NF91 8797 aaKnown RBP4.45□□□□□ -1.7
SS18-215ENST00000580642 MT4P47944 62 aa4.44□□□□□ -1.7
SS18-215ENST00000580642 HMCN1Q96RW7 5635 aa4.38□□□□□ -1.71
SS18-215ENST00000580642 KRTAP20-2Q3LI61 65 aa4.36□□□□□ -1.71
SS18-215ENST00000580642 MT3P25713 68 aa4.27□□□□□ -1.73
SS18-215ENST00000580642 KRTAP6-2Q3LI66 62 aa4.24□□□□□ -1.73
SS18-215ENST00000580642 KRTAP5-2Q701N4 177 aa4.24□□□□□ -1.73
SS18-215ENST00000580642 GPR98Q8WXG9 6306 aa4.16□□□□□ -1.74
SS18-215ENST00000580642 AHNAK2Q8IVF2 5795 aa4.04□□□□□ -1.76
SS18-215ENST00000580642 A0A0A0MQY5 61 aa4.03□□□□□ -1.76
SS18-215ENST00000580642 KRTAP5-10Q6L8G5 202 aa3.97□□□□□ -1.77
SS18-215ENST00000580642 LCE3DQ9BYE3 92 aa3.96□□□□□ -1.78
SS18-215ENST00000580642 INE1O15225 51 aa3.87□□□□□ -1.79
SS18-215ENST00000580642 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.86□□□□□ -1.79
SS18-215ENST00000580642 OBSCNQ5VST9 7968 aa3.85□□□□□ -1.79
SS18-215ENST00000580642 LCE3EQ5T5B0 92 aa3.84□□□□□ -1.79
SS18-215ENST00000580642 LCE1EQ5T753 118 aa3.81□□□□□ -1.8
SS18-215ENST00000580642 KRTAP5-7Q6L8G8 165 aa3.81□□□□□ -1.8
SS18-215ENST00000580642 KRTAP5-8O75690 187 aa3.68□□□□□ -1.82
SS18-215ENST00000580642 KRTAP5-1Q6L8H4 278 aa3.65□□□□□ -1.83
SS18-215ENST00000580642 KRTAP5-11Q6L8G4 156 aa3.57□□□□□ -1.84
SS18-215ENST00000580642 MUC5ACP98088 5654 aa3.54□□□□□ -1.84
SS18-215ENST00000580642 LCE1CQ5T751 118 aa3.51□□□□□ -1.85
SS18-215ENST00000580642 LCE1BQ5T7P3 118 aa3.51□□□□□ -1.85
SS18-215ENST00000580642 MUC5BQ9HC84 5762 aaPredicted RBP3.31□□□□□ -1.88
SS18-215ENST00000580642 AHNAKQ09666 5890 aaKnown RBP3.29□□□□□ -1.88
SS18-215ENST00000580642 LCE1FQ5T754 118 aa3.25□□□□□ -1.89
SS18-215ENST00000580642 PRM1P04553 51 aa3.19□□□□□ -1.9
SS18-215ENST00000580642 KRTAP4-4Q9BYR3 166 aa3.19□□□□□ -1.9
SS18-215ENST00000580642 KRTAP21-2Q3LI59 83 aa3.01□□□□□ -1.93
SS18-215ENST00000580642 PHGR1C9JFL3 82 aa2.66□□□□□ -1.98
SS18-215ENST00000580642 MUC19Q7Z5P9 8384 aa2.25□□□□□ -2.05
SS18-215ENST00000580642 KRTAP21-1Q3LI58 79 aa1.97□□□□□ -2.09
SS18-215ENST00000580642 MUC16Q8WXI7 14507 aa1.65□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 129.6 ms