RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 KRTAP15-1Q3LI76 137 aa8.97□□□□□ -0.97
SHMT1-207ENST00000580002 MT1LQ93083 61 aa8.97□□□□□ -0.97
SHMT1-207ENST00000580002 LCE1AQ5T7P2 110 aa8.9□□□□□ -0.98
SHMT1-207ENST00000580002 KRTAP19-3Q7Z4W3 81 aa8.87□□□□□ -0.99
SHMT1-207ENST00000580002 SPRR2EP22531 72 aa8.86□□□□□ -0.99
SHMT1-207ENST00000580002 SPRR2BP35325 72 aa8.86□□□□□ -0.99
SHMT1-207ENST00000580002 SPRR2AP35326 72 aa8.86□□□□□ -0.99
SHMT1-207ENST00000580002 KRTAP4-7Q9BYR0 210 aa8.78□□□□□ -1
SHMT1-207ENST00000580002 LCE5AQ5TCM9 118 aa8.77□□□□□ -1.01
SHMT1-207ENST00000580002 NEBP20929 6669 aa8.74□□□□□ -1.01
SHMT1-207ENST00000580002 MT1GP13640 62 aa8.73□□□□□ -1.01
SHMT1-207ENST00000580002 MT1MQ8N339 61 aa8.68□□□□□ -1.02
SHMT1-207ENST00000580002 KRTAP4-3Q9BYR4 195 aa8.64□□□□□ -1.03
SHMT1-207ENST00000580002 LCE3CQ5T5A8 94 aa8.63□□□□□ -1.03
SHMT1-207ENST00000580002 SPRR2DP22532 72 aa8.53□□□□□ -1.04
SHMT1-207ENST00000580002 DSTQ03001 7570 aaKnown RBP8.51□□□□□ -1.05
SHMT1-207ENST00000580002 KRTAP19-4Q3LI73 84 aa8.47□□□□□ -1.05
SHMT1-207ENST00000580002 SPRR5A0A1B0GTR4 108 aa8.37□□□□□ -1.07
SHMT1-207ENST00000580002 KRTAP9-6A8MVA2 160 aa8.28□□□□□ -1.08
SHMT1-207ENST00000580002 LOC100996750A0A140TA64 210 aa8.25□□□□□ -1.09
SHMT1-207ENST00000580002 LCE3BQ5TA77 95 aa8.22□□□□□ -1.09
SHMT1-207ENST00000580002 LUZP6Q538Z0 58 aa8.14□□□□□ -1.11
SHMT1-207ENST00000580002 KRTAP2-3P0C7H8 128 aa8.08□□□□□ -1.12
SHMT1-207ENST00000580002 KRTAP2-4Q9BYR9 128 aa8.08□□□□□ -1.12
SHMT1-207ENST00000580002 KRTAP20-1Q3LI63 56 aa8.05□□□□□ -1.12
SHMT1-207ENST00000580002 NDUFAF8A1L188 74 aa7.98□□□□□ -1.13
SHMT1-207ENST00000580002 H3BS24 57 aa7.92□□□□□ -1.14
SHMT1-207ENST00000580002 KRTAP2-2Q9BYT5 123 aa7.89□□□□□ -1.15
SHMT1-207ENST00000580002 KRTAP2-1Q9BYU5 128 aa7.89□□□□□ -1.15
SHMT1-207ENST00000580002 KRTAP5-5Q701N2 237 aaPredicted RBP7.85□□□□□ -1.15
SHMT1-207ENST00000580002 KRTAP5-4Q6L8H1 288 aa7.63□□□□□ -1.19
SHMT1-207ENST00000580002 KRTAP6-1Q3LI64 71 aa7.6□□□□□ -1.19
SHMT1-207ENST00000580002 MT1AP04731 61 aa7.58□□□□□ -1.2
SHMT1-207ENST00000580002 SYNE1Q8NF91 8797 aaKnown RBP7.57□□□□□ -1.2
SHMT1-207ENST00000580002 KRTAP4-9Q9BYQ8 210 aa7.54□□□□□ -1.2
SHMT1-207ENST00000580002 LCE4AQ5TA78 99 aa7.49□□□□□ -1.21
SHMT1-207ENST00000580002 MT4P47944 62 aa7.48□□□□□ -1.21
SHMT1-207ENST00000580002 KRTAP4-6Q9BYQ5 205 aa7.42□□□□□ -1.22
SHMT1-207ENST00000580002 LCE1DQ5T752 114 aa7.38□□□□□ -1.23
SHMT1-207ENST00000580002 HMCN1Q96RW7 5635 aa7.31□□□□□ -1.24
SHMT1-207ENST00000580002 KRTAP12-4P60329 112 aa7.29□□□□□ -1.24
SHMT1-207ENST00000580002 KRTAP9-4Q9BYQ2 154 aa7.25□□□□□ -1.25
SHMT1-207ENST00000580002 A0A0A0MQY5 61 aa7.23□□□□□ -1.25
SHMT1-207ENST00000580002 KRTAP20-2Q3LI61 65 aa7.17□□□□□ -1.26
SHMT1-207ENST00000580002 KRTAP6-2Q3LI66 62 aa7.05□□□□□ -1.28
SHMT1-207ENST00000580002 KRTAP5-3Q6L8H2 238 aa6.93□□□□□ -1.3
SHMT1-207ENST00000580002 KRTAP5-2Q701N4 177 aa6.86□□□□□ -1.31
SHMT1-207ENST00000580002 MT3P25713 68 aa6.85□□□□□ -1.31
SHMT1-207ENST00000580002 INE1O15225 51 aa6.66□□□□□ -1.34
SHMT1-207ENST00000580002 AHNAK2Q8IVF2 5795 aa6.63□□□□□ -1.35
SHMT1-207ENST00000580002 OBSCNQ5VST9 7968 aa6.63□□□□□ -1.35
SHMT1-207ENST00000580002 LCE3DQ9BYE3 92 aa6.41□□□□□ -1.38
SHMT1-207ENST00000580002 KRTAP5-10Q6L8G5 202 aa6.29□□□□□ -1.4
SHMT1-207ENST00000580002 KRTAP4-11Q9BYQ6 195 aa6.29□□□□□ -1.4
SHMT1-207ENST00000580002 GPR98Q8WXG9 6306 aa6.22□□□□□ -1.41
SHMT1-207ENST00000580002 LCE3EQ5T5B0 92 aa6.18□□□□□ -1.42
SHMT1-207ENST00000580002 KRTAP5-8O75690 187 aa6.08□□□□□ -1.44
SHMT1-207ENST00000580002 KRTAP5-1Q6L8H4 278 aa6.03□□□□□ -1.44
SHMT1-207ENST00000580002 LCE1EQ5T753 118 aa5.99□□□□□ -1.45
SHMT1-207ENST00000580002 MUC5ACP98088 5654 aa5.86□□□□□ -1.47
SHMT1-207ENST00000580002 KRTAP5-7Q6L8G8 165 aa5.83□□□□□ -1.48
SHMT1-207ENST00000580002 LCE1BQ5T7P3 118 aa5.75□□□□□ -1.49
SHMT1-207ENST00000580002 KRTAP4-2Q9BYR5 136 aa5.71□□□□□ -1.5
SHMT1-207ENST00000580002 LCE1CQ5T751 118 aa5.6□□□□□ -1.51
SHMT1-207ENST00000580002 KRTAP9-9Q9BYP9 154 aa5.48□□□□□ -1.53
SHMT1-207ENST00000580002 MUC5BQ9HC84 5762 aaPredicted RBP5.35□□□□□ -1.55
SHMT1-207ENST00000580002 PRM1P04553 51 aa5.3□□□□□ -1.56
SHMT1-207ENST00000580002 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.19□□□□□ -1.58
SHMT1-207ENST00000580002 AHNAKQ09666 5890 aaKnown RBP5.09□□□□□ -1.59
SHMT1-207ENST00000580002 KRTAP21-2Q3LI59 83 aa4.97□□□□□ -1.61
SHMT1-207ENST00000580002 KRTAP5-11Q6L8G4 156 aa4.97□□□□□ -1.61
SHMT1-207ENST00000580002 KRTAP4-12Q9BQ66 201 aa4.93□□□□□ -1.62
SHMT1-207ENST00000580002 KRTAP4-4Q9BYR3 166 aa4.55□□□□□ -1.68
SHMT1-207ENST00000580002 LCE1FQ5T754 118 aa4.5□□□□□ -1.69
SHMT1-207ENST00000580002 PHGR1C9JFL3 82 aa4.3□□□□□ -1.72
SHMT1-207ENST00000580002 MUC19Q7Z5P9 8384 aa3.98□□□□□ -1.77
SHMT1-207ENST00000580002 KRTAP21-1Q3LI58 79 aa3.27□□□□□ -1.89
SHMT1-207ENST00000580002 MUC16Q8WXI7 14507 aa2.78□□□□□ -1.96
Retrieved 78 of 20,778 RNA–protein pairs in 91.7 ms