RNA–Protein interactions for RNA: ENST00000578317.5

COPS3-215, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-215ENST00000578317 KRTAP12-2P59991 146 aa3.37□□□□□ -1.87
COPS3-215ENST00000578317 CDC42SE1Q9NRR8 79 aa3.37□□□□□ -1.87
COPS3-215ENST00000578317 SPINT4Q6UDR6 99 aa3.37□□□□□ -1.87
COPS3-215ENST00000578317 FCGBPQ9Y6R7 5405 aaPredicted RBP3.36□□□□□ -1.87
COPS3-215ENST00000578317 PRO2289Q9P1D8 64 aa3.33□□□□□ -1.88
COPS3-215ENST00000578317 K7ERS5 55 aa3.33□□□□□ -1.88
COPS3-215ENST00000578317 MT1XP80297 61 aa3.33□□□□□ -1.88
COPS3-215ENST00000578317 LUZP6Q538Z0 58 aa3.3□□□□□ -1.88
COPS3-215ENST00000578317 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.28□□□□□ -1.88
COPS3-215ENST00000578317 KRTAP9-6A8MVA2 160 aa3.26□□□□□ -1.89
COPS3-215ENST00000578317 LCE3EQ5T5B0 92 aa3.22□□□□□ -1.89
COPS3-215ENST00000578317 C10orf95Q9H7T3 257 aa3.22□□□□□ -1.89
COPS3-215ENST00000578317 MACF1Q9UPN3 7388 aaKnown RBP3.22□□□□□ -1.89
COPS3-215ENST00000578317 KMT2DO14686 5537 aa3.17□□□□□ -1.9
COPS3-215ENST00000578317 TNP1P09430 55 aa3.17□□□□□ -1.9
COPS3-215ENST00000578317 ROMO1P60602 79 aa3.16□□□□□ -1.9
COPS3-215ENST00000578317 KRTAP25-1Q3LHN0 102 aa3.15□□□□□ -1.91
COPS3-215ENST00000578317 SYNE2Q8WXH0 6885 aaKnown RBP3.11□□□□□ -1.91
COPS3-215ENST00000578317 KRTAP6-3Q3LI67 103 aa3.05□□□□□ -1.92
COPS3-215ENST00000578317 KRTAP8-1Q8IUC2 63 aa3.04□□□□□ -1.92
COPS3-215ENST00000578317 LCE3AQ5TA76 89 aa3.03□□□□□ -1.92
COPS3-215ENST00000578317 MUC12Q9UKN1 5478 aa3.02□□□□□ -1.93
COPS3-215ENST00000578317 KRTAP5-9P26371 169 aa3.02□□□□□ -1.93
COPS3-215ENST00000578317 PP632Q6XCG6 107 aa3.02□□□□□ -1.93
COPS3-215ENST00000578317 MDN1Q9NU22 5596 aa3.01□□□□□ -1.93
COPS3-215ENST00000578317 KRTAP19-7Q3SYF9 63 aa2.98□□□□□ -1.93
COPS3-215ENST00000578317 KRTAP19-5Q3LI72 72 aa2.96□□□□□ -1.94
COPS3-215ENST00000578317 SPRR2FQ96RM1 72 aa2.96□□□□□ -1.94
COPS3-215ENST00000578317 MT1EP04732 61 aa2.93□□□□□ -1.94
COPS3-215ENST00000578317 KRTAP12-3P60328 96 aa2.93□□□□□ -1.94
COPS3-215ENST00000578317 SPRR5A0A1B0GTR4 108 aa2.93□□□□□ -1.94
COPS3-215ENST00000578317 KRTAP5-1Q6L8H4 278 aa2.89□□□□□ -1.95
COPS3-215ENST00000578317 NEBP20929 6669 aa2.89□□□□□ -1.95
COPS3-215ENST00000578317 SPRR2EP22531 72 aa2.86□□□□□ -1.95
COPS3-215ENST00000578317 SPRR2BP35325 72 aa2.86□□□□□ -1.95
COPS3-215ENST00000578317 SPRR2AP35326 72 aa2.86□□□□□ -1.95
COPS3-215ENST00000578317 KRTAP19-3Q7Z4W3 81 aa2.86□□□□□ -1.95
COPS3-215ENST00000578317 MT1LQ93083 61 aa2.85□□□□□ -1.95
COPS3-215ENST00000578317 MT1GP13640 62 aa2.84□□□□□ -1.95
COPS3-215ENST00000578317 MT1MQ8N339 61 aa2.76□□□□□ -1.97
COPS3-215ENST00000578317 SPRR2DP22532 72 aa2.75□□□□□ -1.97
COPS3-215ENST00000578317 KRTAP5-4Q6L8H1 288 aa2.75□□□□□ -1.97
COPS3-215ENST00000578317 LCE3DQ9BYE3 92 aa2.75□□□□□ -1.97
COPS3-215ENST00000578317 KRTAP20-1Q3LI63 56 aa2.74□□□□□ -1.97
COPS3-215ENST00000578317 DSTQ03001 7570 aaKnown RBP2.73□□□□□ -1.97
COPS3-215ENST00000578317 KRTAP4-4Q9BYR3 166 aa2.73□□□□□ -1.97
COPS3-215ENST00000578317 KRTAP2-3P0C7H8 128 aa2.71□□□□□ -1.98
COPS3-215ENST00000578317 KRTAP2-4Q9BYR9 128 aa2.71□□□□□ -1.98
COPS3-215ENST00000578317 KRTAP4-3Q9BYR4 195 aa2.66□□□□□ -1.98
COPS3-215ENST00000578317 OBSCNQ5VST9 7968 aa2.64□□□□□ -1.99
COPS3-215ENST00000578317 KRTAP2-1Q9BYU5 128 aa2.64□□□□□ -1.99
COPS3-215ENST00000578317 KRTAP5-5Q701N2 237 aaPredicted RBP2.59□□□□□ -1.99
COPS3-215ENST00000578317 INE1O15225 51 aa2.52□□□□□ -2.01
COPS3-215ENST00000578317 SYNE1Q8NF91 8797 aaKnown RBP2.48□□□□□ -2.01
COPS3-215ENST00000578317 MT1AP04731 61 aa2.43□□□□□ -2.02
COPS3-215ENST00000578317 HMCN1Q96RW7 5635 aa2.42□□□□□ -2.02
COPS3-215ENST00000578317 MT4P47944 62 aa2.41□□□□□ -2.02
COPS3-215ENST00000578317 KRTAP12-4P60329 112 aa2.39□□□□□ -2.03
COPS3-215ENST00000578317 KRTAP6-1Q3LI64 71 aa2.39□□□□□ -2.03
COPS3-215ENST00000578317 KRTAP5-2Q701N4 177 aa2.39□□□□□ -2.03
COPS3-215ENST00000578317 LCE1CQ5T751 118 aa2.37□□□□□ -2.03
COPS3-215ENST00000578317 LCE1BQ5T7P3 118 aa2.37□□□□□ -2.03
COPS3-215ENST00000578317 KRTAP20-2Q3LI61 65 aa2.31□□□□□ -2.04
COPS3-215ENST00000578317 AHNAK2Q8IVF2 5795 aa2.26□□□□□ -2.05
COPS3-215ENST00000578317 KRTAP6-2Q3LI66 62 aa2.23□□□□□ -2.05
COPS3-215ENST00000578317 GPR98Q8WXG9 6306 aa2.17□□□□□ -2.06
COPS3-215ENST00000578317 KRTAP5-10Q6L8G5 202 aa2.17□□□□□ -2.06
COPS3-215ENST00000578317 KRTAP5-8O75690 187 aa2.1□□□□□ -2.07
COPS3-215ENST00000578317 KRTAP5-7Q6L8G8 165 aa2.04□□□□□ -2.08
COPS3-215ENST00000578317 MUC19Q7Z5P9 8384 aa1.98□□□□□ -2.09
COPS3-215ENST00000578317 MUC5ACP98088 5654 aa1.98□□□□□ -2.09
COPS3-215ENST00000578317 MUC5BQ9HC84 5762 aaPredicted RBP1.83□□□□□ -2.12
COPS3-215ENST00000578317 AHNAKQ09666 5890 aaKnown RBP1.77□□□□□ -2.13
COPS3-215ENST00000578317 KRTAP21-2Q3LI59 83 aa1.69□□□□□ -2.14
COPS3-215ENST00000578317 PRM1P04553 51 aa1.62□□□□□ -2.15
COPS3-215ENST00000578317 PHGR1C9JFL3 82 aa1.4□□□□□ -2.18
COPS3-215ENST00000578317 KRTAP21-1Q3LI58 79 aa1□□□□□ -2.25
COPS3-215ENST00000578317 MUC16Q8WXI7 14507 aa0.91□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 65.3 ms