RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 RNF213Q63HN8 5207 aa1.23□□□□□ -2.21
SMCHD1-203ENST00000577880 KRTAP9-3Q9BYQ3 159 aa1.23□□□□□ -2.21
SMCHD1-203ENST00000577880 KRTAP4-9Q9BYQ8 210 aa1.23□□□□□ -2.21
SMCHD1-203ENST00000577880 LRP1Q07954 4544 aaKnown RBP1.22□□□□□ -2.21
SMCHD1-203ENST00000577880 MT2AP02795 61 aa1.22□□□□□ -2.21
SMCHD1-203ENST00000577880 SPRR2EP22531 72 aa1.21□□□□□ -2.21
SMCHD1-203ENST00000577880 SPRR2BP35325 72 aa1.21□□□□□ -2.21
SMCHD1-203ENST00000577880 SPRR2AP35326 72 aa1.21□□□□□ -2.21
SMCHD1-203ENST00000577880 AHNAK2Q8IVF2 5795 aa1.21□□□□□ -2.22
SMCHD1-203ENST00000577880 FLGP20930 4061 aaPredicted RBP1.21□□□□□ -2.22
SMCHD1-203ENST00000577880 LRP2P98164 4655 aa1.2□□□□□ -2.22
SMCHD1-203ENST00000577880 KRTAP19-6Q3LI70 58 aa1.2□□□□□ -2.22
SMCHD1-203ENST00000577880 KRTAP23-1A1A580 65 aa1.19□□□□□ -2.22
SMCHD1-203ENST00000577880 LCE3AQ5TA76 89 aa1.19□□□□□ -2.22
SMCHD1-203ENST00000577880 KRTAP10-5P60370 271 aa1.19□□□□□ -2.22
SMCHD1-203ENST00000577880 KRTAP4-1Q9BYQ7 146 aa1.19□□□□□ -2.22
SMCHD1-203ENST00000577880 SPRR2DP22532 72 aa1.19□□□□□ -2.22
SMCHD1-203ENST00000577880 SPRR5A0A1B0GTR4 108 aa1.18□□□□□ -2.22
SMCHD1-203ENST00000577880 MT1FP04733 61 aa1.17□□□□□ -2.22
SMCHD1-203ENST00000577880 LCE1AQ5T7P2 110 aa1.17□□□□□ -2.22
SMCHD1-203ENST00000577880 KRTAP4-11Q9BYQ6 195 aa1.17□□□□□ -2.22
SMCHD1-203ENST00000577880 SPRR2GQ9BYE4 73 aa1.16□□□□□ -2.22
SMCHD1-203ENST00000577880 KMT2DO14686 5537 aa1.16□□□□□ -2.22
SMCHD1-203ENST00000577880 KRTAP19-4Q3LI73 84 aa1.15□□□□□ -2.22
SMCHD1-203ENST00000577880 KRTAP12-4P60329 112 aa1.15□□□□□ -2.23
SMCHD1-203ENST00000577880 USH2AO75445 5202 aa1.14□□□□□ -2.23
SMCHD1-203ENST00000577880 FSIP2Q5CZC0 6907 aa1.13□□□□□ -2.23
SMCHD1-203ENST00000577880 INE1O15225 51 aa1.13□□□□□ -2.23
SMCHD1-203ENST00000577880 KRTAP19-5Q3LI72 72 aa1.1□□□□□ -2.23
SMCHD1-203ENST00000577880 KRTAP19-8Q3LI54 63 aa1.1□□□□□ -2.23
SMCHD1-203ENST00000577880 MT1GP13640 62 aa1.08□□□□□ -2.24
SMCHD1-203ENST00000577880 MUC5ACP98088 5654 aa1.08□□□□□ -2.24
SMCHD1-203ENST00000577880 LCE1DQ5T752 114 aa1.08□□□□□ -2.24
SMCHD1-203ENST00000577880 MACF1Q9UPN3 7388 aaKnown RBP1.07□□□□□ -2.24
SMCHD1-203ENST00000577880 LPAP08519 4548 aa1.06□□□□□ -2.24
SMCHD1-203ENST00000577880 LCE3CQ5T5A8 94 aa1.06□□□□□ -2.24
SMCHD1-203ENST00000577880 LCE3BQ5TA77 95 aa1.06□□□□□ -2.24
SMCHD1-203ENST00000577880 KRTAP5-5Q701N2 237 aaPredicted RBP1.05□□□□□ -2.24
SMCHD1-203ENST00000577880 LCE5AQ5TCM9 118 aa1.05□□□□□ -2.24
SMCHD1-203ENST00000577880 SYNE1Q8NF91 8797 aaKnown RBP1.04□□□□□ -2.24
SMCHD1-203ENST00000577880 FCGBPQ9Y6R7 5405 aaPredicted RBP1.04□□□□□ -2.24
SMCHD1-203ENST00000577880 MT1BP07438 61 aa1.04□□□□□ -2.24
SMCHD1-203ENST00000577880 MT4P47944 62 aa1.03□□□□□ -2.24
SMCHD1-203ENST00000577880 MT1XP80297 61 aa1.02□□□□□ -2.25
SMCHD1-203ENST00000577880 KRTAP19-3Q7Z4W3 81 aa1.02□□□□□ -2.25
SMCHD1-203ENST00000577880 KRTAP5-4Q6L8H1 288 aa1.01□□□□□ -2.25
SMCHD1-203ENST00000577880 MDN1Q9NU22 5596 aa0.99□□□□□ -2.25
SMCHD1-203ENST00000577880 MT3P25713 68 aa0.98□□□□□ -2.25
SMCHD1-203ENST00000577880 KRTAP5-8O75690 187 aa0.97□□□□□ -2.25
SMCHD1-203ENST00000577880 KRTAP5-11Q6L8G4 156 aa0.97□□□□□ -2.25
SMCHD1-203ENST00000577880 KRTAP19-2Q3LHN2 52 aa0.97□□□□□ -2.25
SMCHD1-203ENST00000577880 LCE3DQ9BYE3 92 aa0.96□□□□□ -2.26
SMCHD1-203ENST00000577880 MT1LQ93083 61 aa0.96□□□□□ -2.26
SMCHD1-203ENST00000577880 LCE1BQ5T7P3 118 aa0.95□□□□□ -2.26
SMCHD1-203ENST00000577880 MT1EP04732 61 aa0.95□□□□□ -2.26
SMCHD1-203ENST00000577880 LCE3EQ5T5B0 92 aa0.95□□□□□ -2.26
SMCHD1-203ENST00000577880 MT1MQ8N339 61 aa0.94□□□□□ -2.26
SMCHD1-203ENST00000577880 MUC12Q9UKN1 5478 aa0.9□□□□□ -2.27
SMCHD1-203ENST00000577880 OBSCNQ5VST9 7968 aa0.89□□□□□ -2.27
SMCHD1-203ENST00000577880 KRTAP4-4Q9BYR3 166 aa0.89□□□□□ -2.27
SMCHD1-203ENST00000577880 MT1AP04731 61 aa0.88□□□□□ -2.27
SMCHD1-203ENST00000577880 KRTAP5-1Q6L8H4 278 aa0.87□□□□□ -2.27
SMCHD1-203ENST00000577880 LCE1CQ5T751 118 aa0.86□□□□□ -2.27
SMCHD1-203ENST00000577880 LCE1EQ5T753 118 aa0.86□□□□□ -2.27
SMCHD1-203ENST00000577880 LCE1FQ5T754 118 aa0.86□□□□□ -2.27
SMCHD1-203ENST00000577880 KRTAP4-3Q9BYR4 195 aa0.85□□□□□ -2.27
SMCHD1-203ENST00000577880 KRTAP19-7Q3SYF9 63 aa0.84□□□□□ -2.28
SMCHD1-203ENST00000577880 DSTQ03001 7570 aaKnown RBP0.81□□□□□ -2.28
SMCHD1-203ENST00000577880 KRTAP6-2Q3LI66 62 aa0.81□□□□□ -2.28
SMCHD1-203ENST00000577880 PRM1P04553 51 aa0.78□□□□□ -2.28
SMCHD1-203ENST00000577880 KRTAP6-1Q3LI64 71 aa0.77□□□□□ -2.29
SMCHD1-203ENST00000577880 MUC19Q7Z5P9 8384 aa0.76□□□□□ -2.29
SMCHD1-203ENST00000577880 KRTAP21-1Q3LI58 79 aa0.76□□□□□ -2.29
SMCHD1-203ENST00000577880 KRTAP20-2Q3LI61 65 aa0.76□□□□□ -2.29
SMCHD1-203ENST00000577880 PHGR1C9JFL3 82 aa0.73□□□□□ -2.29
SMCHD1-203ENST00000577880 KRTAP9-6A8MVA2 160 aa0.67□□□□□ -2.3
SMCHD1-203ENST00000577880 KRTAP21-2Q3LI59 83 aa0.6□□□□□ -2.31
SMCHD1-203ENST00000577880 MUC16Q8WXI7 14507 aa0.52□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 603 ms