RNA–Protein interactions for RNA: ENST00000575454.1

SMG6-218, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-218ENST00000575454 PRO0628Q9UI54 55 aa3.02□□□□□ -1.93
SMG6-218ENST00000575454 SERP1Q9Y6X1 66 aa3□□□□□ -1.93
SMG6-218ENST00000575454 LCE3AQ5TA76 89 aa2.99□□□□□ -1.93
SMG6-218ENST00000575454 SPANXA2-OT1Q8N9U9 137 aa2.98□□□□□ -1.93
SMG6-218ENST00000575454 TNP1P09430 55 aa2.97□□□□□ -1.93
SMG6-218ENST00000575454 KRTAP12-1P59990 96 aa2.97□□□□□ -1.93
SMG6-218ENST00000575454 SPATA8Q6RVD6 105 aa2.97□□□□□ -1.93
SMG6-218ENST00000575454 KRTAP5-5Q701N2 237 aaPredicted RBP2.97□□□□□ -1.93
SMG6-218ENST00000575454 J3QR89 54 aa2.96□□□□□ -1.94
SMG6-218ENST00000575454 RPS28P62857 69 aaKnown RBP2.96□□□□□ -1.94
SMG6-218ENST00000575454 A0A1B0GU33 70 aa2.95□□□□□ -1.94
SMG6-218ENST00000575454 KRTAP4-7Q9BYR0 210 aa2.95□□□□□ -1.94
SMG6-218ENST00000575454 SYNE1Q8NF91 8797 aaKnown RBP2.93□□□□□ -1.94
SMG6-218ENST00000575454 KRTAP12-3P60328 96 aa2.91□□□□□ -1.94
SMG6-218ENST00000575454 SNURFQ9Y675 71 aa2.91□□□□□ -1.94
SMG6-218ENST00000575454 SMIM26A0A096LP01 95 aa2.9□□□□□ -1.95
SMG6-218ENST00000575454 KRTAP4-11Q9BYQ6 195 aa2.9□□□□□ -1.95
SMG6-218ENST00000575454 PMAIP1Q13794 54 aa2.89□□□□□ -1.95
SMG6-218ENST00000575454 COA5Q86WW8 74 aa2.88□□□□□ -1.95
SMG6-218ENST00000575454 ANAPC13Q9BS18 74 aa2.87□□□□□ -1.95
SMG6-218ENST00000575454 KRTAP5-8O75690 187 aa2.84□□□□□ -1.95
SMG6-218ENST00000575454 LOC100996750A0A140TA64 210 aa2.81□□□□□ -1.96
SMG6-218ENST00000575454 KRTAP19-4Q3LI73 84 aa2.81□□□□□ -1.96
SMG6-218ENST00000575454 A8MU10 97 aa2.8□□□□□ -1.96
SMG6-218ENST00000575454 SERP2Q8N6R1 65 aa2.8□□□□□ -1.96
SMG6-218ENST00000575454 KRTAP23-1A1A580 65 aa2.78□□□□□ -1.96
SMG6-218ENST00000575454 KRTAP5-2Q701N4 177 aa2.78□□□□□ -1.96
SMG6-218ENST00000575454 OBSCNQ5VST9 7968 aa2.77□□□□□ -1.97
SMG6-218ENST00000575454 A0A1B0GU69 56 aa2.77□□□□□ -1.97
SMG6-218ENST00000575454 CCDC179H3BU77 68 aa2.75□□□□□ -1.97
SMG6-218ENST00000575454 KRTAP9-9Q9BYP9 154 aa2.74□□□□□ -1.97
SMG6-218ENST00000575454 TMEM258P61165 79 aa2.73□□□□□ -1.97
SMG6-218ENST00000575454 PSPHP1O15172 72 aa2.72□□□□□ -1.97
SMG6-218ENST00000575454 KTN1-AS1Q86SY8 53 aa2.7□□□□□ -1.98
SMG6-218ENST00000575454 MT1AP04731 61 aa2.69□□□□□ -1.98
SMG6-218ENST00000575454 BRK1Q8WUW1 75 aa2.69□□□□□ -1.98
SMG6-218ENST00000575454 KRTAP6-1Q3LI64 71 aa2.67□□□□□ -1.98
SMG6-218ENST00000575454 KRTAP25-1Q3LHN0 102 aa2.66□□□□□ -1.98
SMG6-218ENST00000575454 LCE3CQ5T5A8 94 aa2.64□□□□□ -1.99
SMG6-218ENST00000575454 PRR15LQ9BU68 103 aa2.64□□□□□ -1.99
SMG6-218ENST00000575454 KRTAP9-4Q9BYQ2 154 aa2.64□□□□□ -1.99
SMG6-218ENST00000575454 KRTAP6-2Q3LI66 62 aa2.63□□□□□ -1.99
SMG6-218ENST00000575454 COX7CP15954 63 aa2.62□□□□□ -1.99
SMG6-218ENST00000575454 KRTAP15-1Q3LI76 137 aa2.62□□□□□ -1.99
SMG6-218ENST00000575454 H7BZZ5 65 aa2.6□□□□□ -1.99
SMG6-218ENST00000575454 ATP5EP56381 51 aaPredicted RBP2.58□□□□□ -2
SMG6-218ENST00000575454 KRTAP5-1Q6L8H4 278 aa2.55□□□□□ -2
SMG6-218ENST00000575454 UQCR11O14957 56 aa2.52□□□□□ -2.01
SMG6-218ENST00000575454 MT3P25713 68 aa2.52□□□□□ -2.01
SMG6-218ENST00000575454 PRAC1Q96KF2 57 aa2.51□□□□□ -2.01
SMG6-218ENST00000575454 K7ERS5 55 aa2.49□□□□□ -2.01
SMG6-218ENST00000575454 LINC01558Q9Y6Z2 57 aa2.49□□□□□ -2.01
SMG6-218ENST00000575454 Q1T7F1 81 aa2.47□□□□□ -2.01
SMG6-218ENST00000575454 KRTAP4-12Q9BQ66 201 aa2.46□□□□□ -2.02
SMG6-218ENST00000575454 KRTAP9-6A8MVA2 160 aa2.45□□□□□ -2.02
SMG6-218ENST00000575454 LUZP6Q538Z0 58 aa2.43□□□□□ -2.02
SMG6-218ENST00000575454 MIR22HGQ0VDD5 57 aa2.42□□□□□ -2.02
SMG6-218ENST00000575454 A6NED7 52 aa2.41□□□□□ -2.02
SMG6-218ENST00000575454 LCE1EQ5T753 118 aa2.38□□□□□ -2.03
SMG6-218ENST00000575454 CDC42SE1Q9NRR8 79 aa2.37□□□□□ -2.03
SMG6-218ENST00000575454 ROMO1P60602 79 aa2.36□□□□□ -2.03
SMG6-218ENST00000575454 LCE1BQ5T7P3 118 aa2.23□□□□□ -2.05
SMG6-218ENST00000575454 KRTAP4-2Q9BYR5 136 aa2.22□□□□□ -2.05
SMG6-218ENST00000575454 LCE1CQ5T751 118 aa2.2□□□□□ -2.06
SMG6-218ENST00000575454 NDUFAF8A1L188 74 aa2.18□□□□□ -2.06
SMG6-218ENST00000575454 LCE1FQ5T754 118 aa2.06□□□□□ -2.08
SMG6-218ENST00000575454 KRTAP5-11Q6L8G4 156 aa2.04□□□□□ -2.08
SMG6-218ENST00000575454 PHGR1C9JFL3 82 aa2.03□□□□□ -2.08
SMG6-218ENST00000575454 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.96□□□□□ -2.1
SMG6-218ENST00000575454 INE1O15225 51 aa1.95□□□□□ -2.1
SMG6-218ENST00000575454 LCE3DQ9BYE3 92 aa1.86□□□□□ -2.11
SMG6-218ENST00000575454 KRTAP21-2Q3LI59 83 aa1.76□□□□□ -2.13
SMG6-218ENST00000575454 MUC19Q7Z5P9 8384 aa1.71□□□□□ -2.14
SMG6-218ENST00000575454 LCE3EQ5T5B0 92 aa1.7□□□□□ -2.14
SMG6-218ENST00000575454 KRTAP4-4Q9BYR3 166 aa1.64□□□□□ -2.15
SMG6-218ENST00000575454 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.16
SMG6-218ENST00000575454 MUC16Q8WXI7 14507 aa1.16□□□□□ -2.22
SMG6-218ENST00000575454 PRM1P04553 51 aa1.08□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 37.7 ms