RNA–Protein interactions for RNA: ENST00000574163.1

NDE1-210, Transcript of nudE neurodevelopment protein 1, humanhuman

TSL 3

Gene NDE1, Length 352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-210ENST00000574163 SPRR2AP35326 72 aa3.81□□□□□ -1.8
NDE1-210ENST00000574163 KRTAP20-1Q3LI63 56 aa3.79□□□□□ -1.8
NDE1-210ENST00000574163 A8MU10 97 aa3.77□□□□□ -1.81
NDE1-210ENST00000574163 UQCR11O14957 56 aa3.73□□□□□ -1.81
NDE1-210ENST00000574163 NDUFAF8A1L188 74 aa3.71□□□□□ -1.82
NDE1-210ENST00000574163 KRTAP2-3P0C7H8 128 aa3.71□□□□□ -1.82
NDE1-210ENST00000574163 KRTAP2-4Q9BYR9 128 aa3.71□□□□□ -1.82
NDE1-210ENST00000574163 V9GYY9 64 aa3.7□□□□□ -1.82
NDE1-210ENST00000574163 SPRR2DP22532 72 aa3.69□□□□□ -1.82
NDE1-210ENST00000574163 KRTAP19-7Q3SYF9 63 aa3.67□□□□□ -1.82
NDE1-210ENST00000574163 Q1T7F1 81 aa3.66□□□□□ -1.82
NDE1-210ENST00000574163 MT1EP04732 61 aa3.65□□□□□ -1.83
NDE1-210ENST00000574163 TNP1P09430 55 aa3.65□□□□□ -1.83
NDE1-210ENST00000574163 C10orf95Q9H7T3 257 aa3.65□□□□□ -1.83
NDE1-210ENST00000574163 MIR22HGQ0VDD5 57 aa3.64□□□□□ -1.83
NDE1-210ENST00000574163 PSPHP1O15172 72 aa3.6□□□□□ -1.83
NDE1-210ENST00000574163 KRTAP2-1Q9BYU5 128 aa3.6□□□□□ -1.83
NDE1-210ENST00000574163 KRTAP19-5Q3LI72 72 aa3.59□□□□□ -1.83
NDE1-210ENST00000574163 KRTAP19-3Q7Z4W3 81 aa3.59□□□□□ -1.83
NDE1-210ENST00000574163 K7ERS5 55 aa3.58□□□□□ -1.84
NDE1-210ENST00000574163 LCE1FQ5T754 118 aa3.58□□□□□ -1.84
NDE1-210ENST00000574163 LCE3AQ5TA76 89 aa3.57□□□□□ -1.84
NDE1-210ENST00000574163 RPS28P62857 69 aaKnown RBP3.56□□□□□ -1.84
NDE1-210ENST00000574163 MT1GP13640 62 aa3.52□□□□□ -1.85
NDE1-210ENST00000574163 KRTAP25-1Q3LHN0 102 aa3.52□□□□□ -1.85
NDE1-210ENST00000574163 A6NED7 52 aa3.51□□□□□ -1.85
NDE1-210ENST00000574163 PP632Q6XCG6 107 aa3.51□□□□□ -1.85
NDE1-210ENST00000574163 MT1LQ93083 61 aa3.5□□□□□ -1.85
NDE1-210ENST00000574163 DSTQ03001 7570 aaKnown RBP3.47□□□□□ -1.85
NDE1-210ENST00000574163 MT1MQ8N339 61 aa3.46□□□□□ -1.86
NDE1-210ENST00000574163 KRTAP12-3P60328 96 aa3.45□□□□□ -1.86
NDE1-210ENST00000574163 CDC42SE1Q9NRR8 79 aa3.39□□□□□ -1.87
NDE1-210ENST00000574163 ROMO1P60602 79 aa3.33□□□□□ -1.88
NDE1-210ENST00000574163 LCE3CQ5T5A8 94 aa3.33□□□□□ -1.88
NDE1-210ENST00000574163 KRTAP4-3Q9BYR4 195 aa3.31□□□□□ -1.88
NDE1-210ENST00000574163 LCE1EQ5T753 118 aa3.27□□□□□ -1.89
NDE1-210ENST00000574163 KRTAP5-4Q6L8H1 288 aa3.26□□□□□ -1.89
NDE1-210ENST00000574163 HMCN1Q96RW7 5635 aa3.22□□□□□ -1.89
NDE1-210ENST00000574163 GPR98Q8WXG9 6306 aa3.2□□□□□ -1.9
NDE1-210ENST00000574163 MT4P47944 62 aa3.18□□□□□ -1.9
NDE1-210ENST00000574163 KRTAP5-5Q701N2 237 aaPredicted RBP3.17□□□□□ -1.9
NDE1-210ENST00000574163 KRTAP5-11Q6L8G4 156 aa3.16□□□□□ -1.9
NDE1-210ENST00000574163 BRK1Q8WUW1 75 aa3.12□□□□□ -1.91
NDE1-210ENST00000574163 AHNAK2Q8IVF2 5795 aa3.09□□□□□ -1.91
NDE1-210ENST00000574163 SPRR5A0A1B0GTR4 108 aa3.08□□□□□ -1.92
NDE1-210ENST00000574163 KRTAP12-4P60329 112 aa3.06□□□□□ -1.92
NDE1-210ENST00000574163 KRTAP20-2Q3LI61 65 aa3.05□□□□□ -1.92
NDE1-210ENST00000574163 LCE3EQ5T5B0 92 aa3.05□□□□□ -1.92
NDE1-210ENST00000574163 KRTAP9-6A8MVA2 160 aa2.99□□□□□ -1.93
NDE1-210ENST00000574163 MT1AP04731 61 aa2.99□□□□□ -1.93
NDE1-210ENST00000574163 SYNE1Q8NF91 8797 aaKnown RBP2.98□□□□□ -1.93
NDE1-210ENST00000574163 KRTAP5-10Q6L8G5 202 aa2.97□□□□□ -1.93
NDE1-210ENST00000574163 KRTAP6-1Q3LI64 71 aa2.93□□□□□ -1.94
NDE1-210ENST00000574163 PMAIP1Q13794 54 aa2.92□□□□□ -1.94
NDE1-210ENST00000574163 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.92□□□□□ -1.94
NDE1-210ENST00000574163 KRTAP5-2Q701N4 177 aa2.88□□□□□ -1.95
NDE1-210ENST00000574163 KRTAP5-7Q6L8G8 165 aa2.86□□□□□ -1.95
NDE1-210ENST00000574163 PRO0628Q9UI54 55 aa2.83□□□□□ -1.96
NDE1-210ENST00000574163 KRTAP6-2Q3LI66 62 aa2.78□□□□□ -1.96
NDE1-210ENST00000574163 KTN1-AS1Q86SY8 53 aa2.68□□□□□ -1.98
NDE1-210ENST00000574163 KRTAP5-8O75690 187 aa2.65□□□□□ -1.99
NDE1-210ENST00000574163 OBSCNQ5VST9 7968 aa2.65□□□□□ -1.99
NDE1-210ENST00000574163 KRTAP5-1Q6L8H4 278 aa2.58□□□□□ -2
NDE1-210ENST00000574163 LCE3DQ9BYE3 92 aa2.57□□□□□ -2
NDE1-210ENST00000574163 AHNAKQ09666 5890 aaKnown RBP2.53□□□□□ -2
NDE1-210ENST00000574163 MUC5ACP98088 5654 aa2.53□□□□□ -2
NDE1-210ENST00000574163 MUC5BQ9HC84 5762 aaPredicted RBP2.51□□□□□ -2.01
NDE1-210ENST00000574163 KRTAP4-4Q9BYR3 166 aa2.44□□□□□ -2.02
NDE1-210ENST00000574163 LUZP6Q538Z0 58 aa2.39□□□□□ -2.03
NDE1-210ENST00000574163 LCE1CQ5T751 118 aa2.31□□□□□ -2.04
NDE1-210ENST00000574163 LCE1BQ5T7P3 118 aa2.31□□□□□ -2.04
NDE1-210ENST00000574163 KRTAP21-2Q3LI59 83 aa1.94□□□□□ -2.1
NDE1-210ENST00000574163 MUC19Q7Z5P9 8384 aa1.8□□□□□ -2.12
NDE1-210ENST00000574163 PHGR1C9JFL3 82 aa1.8□□□□□ -2.12
NDE1-210ENST00000574163 PRM1P04553 51 aa1.69□□□□□ -2.14
NDE1-210ENST00000574163 INE1O15225 51 aa1.68□□□□□ -2.14
NDE1-210ENST00000574163 KRTAP21-1Q3LI58 79 aa1.33□□□□□ -2.2
NDE1-210ENST00000574163 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 70.9 ms