RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 LCE1DQ5T752 114 aa6.09□□□□□ -1.43
SMG6-214ENST00000573827 KRTAP4-3Q9BYR4 195 aa6.08□□□□□ -1.44
SMG6-214ENST00000573827 RPS28P62857 69 aaKnown RBP6.07□□□□□ -1.44
SMG6-214ENST00000573827 LINC01558Q9Y6Z2 57 aa6.06□□□□□ -1.44
SMG6-214ENST00000573827 LCE4AQ5TA78 99 aa6.04□□□□□ -1.44
SMG6-214ENST00000573827 AHNAK2Q8IVF2 5795 aa6.03□□□□□ -1.44
SMG6-214ENST00000573827 PRR15LQ9BU68 103 aa6.02□□□□□ -1.45
SMG6-214ENST00000573827 KRTAP5-4Q6L8H1 288 aa6.01□□□□□ -1.45
SMG6-214ENST00000573827 MT4P47944 62 aa5.96□□□□□ -1.46
SMG6-214ENST00000573827 KRTAP4-7Q9BYR0 210 aa5.93□□□□□ -1.46
SMG6-214ENST00000573827 KRTAP12-3P60328 96 aa5.92□□□□□ -1.46
SMG6-214ENST00000573827 UQCR11O14957 56 aa5.87□□□□□ -1.47
SMG6-214ENST00000573827 KRTAP4-6Q9BYQ5 205 aa5.86□□□□□ -1.47
SMG6-214ENST00000573827 KRTAP5-5Q701N2 237 aaPredicted RBP5.76□□□□□ -1.49
SMG6-214ENST00000573827 KRTAP25-1Q3LHN0 102 aa5.74□□□□□ -1.49
SMG6-214ENST00000573827 KRTAP5-10Q6L8G5 202 aa5.74□□□□□ -1.49
SMG6-214ENST00000573827 V9GYY9 64 aa5.74□□□□□ -1.49
SMG6-214ENST00000573827 MIR22HGQ0VDD5 57 aa5.73□□□□□ -1.49
SMG6-214ENST00000573827 Q1T7F1 81 aa5.72□□□□□ -1.49
SMG6-214ENST00000573827 SYNE1Q8NF91 8797 aaKnown RBP5.68□□□□□ -1.5
SMG6-214ENST00000573827 KRTAP20-2Q3LI61 65 aa5.63□□□□□ -1.51
SMG6-214ENST00000573827 LOC100996750A0A140TA64 210 aa5.61□□□□□ -1.51
SMG6-214ENST00000573827 SPRR5A0A1B0GTR4 108 aa5.59□□□□□ -1.51
SMG6-214ENST00000573827 PSPHP1O15172 72 aa5.59□□□□□ -1.51
SMG6-214ENST00000573827 KRTAP23-1A1A580 65 aa5.56□□□□□ -1.52
SMG6-214ENST00000573827 KRTAP19-4Q3LI73 84 aa5.56□□□□□ -1.52
SMG6-214ENST00000573827 KRTAP5-3Q6L8H2 238 aa5.56□□□□□ -1.52
SMG6-214ENST00000573827 K7ERS5 55 aa5.54□□□□□ -1.52
SMG6-214ENST00000573827 KRTAP15-1Q3LI76 137 aa5.5□□□□□ -1.53
SMG6-214ENST00000573827 KRTAP5-7Q6L8G8 165 aa5.5□□□□□ -1.53
SMG6-214ENST00000573827 KRTAP12-4P60329 112 aa5.49□□□□□ -1.53
SMG6-214ENST00000573827 LCE3CQ5T5A8 94 aa5.45□□□□□ -1.54
SMG6-214ENST00000573827 BRK1Q8WUW1 75 aa5.44□□□□□ -1.54
SMG6-214ENST00000573827 A6NED7 52 aa5.42□□□□□ -1.54
SMG6-214ENST00000573827 PRO0628Q9UI54 55 aa5.41□□□□□ -1.54
SMG6-214ENST00000573827 CDC42SE1Q9NRR8 79 aa5.37□□□□□ -1.55
SMG6-214ENST00000573827 MT1AP04731 61 aa5.28□□□□□ -1.56
SMG6-214ENST00000573827 KRTAP6-1Q3LI64 71 aa5.27□□□□□ -1.57
SMG6-214ENST00000573827 ROMO1P60602 79 aa5.26□□□□□ -1.57
SMG6-214ENST00000573827 KRTAP5-2Q701N4 177 aa5.26□□□□□ -1.57
SMG6-214ENST00000573827 KRTAP9-6A8MVA2 160 aa5.25□□□□□ -1.57
SMG6-214ENST00000573827 SVIPQ8NHG7 77 aa5.25□□□□□ -1.57
SMG6-214ENST00000573827 PMAIP1Q13794 54 aa5.16□□□□□ -1.58
SMG6-214ENST00000573827 KRTAP4-11Q9BYQ6 195 aa5.15□□□□□ -1.59
SMG6-214ENST00000573827 KRTAP9-4Q9BYQ2 154 aa5.1□□□□□ -1.59
SMG6-214ENST00000573827 AHNAKQ09666 5890 aaKnown RBP5.04□□□□□ -1.6
SMG6-214ENST00000573827 KRTAP6-2Q3LI66 62 aa5.03□□□□□ -1.6
SMG6-214ENST00000573827 MUC5BQ9HC84 5762 aaPredicted RBP5.03□□□□□ -1.6
SMG6-214ENST00000573827 KRTAP5-8O75690 187 aa5.01□□□□□ -1.61
SMG6-214ENST00000573827 OBSCNQ5VST9 7968 aa5□□□□□ -1.61
SMG6-214ENST00000573827 KTN1-AS1Q86SY8 53 aa5□□□□□ -1.61
SMG6-214ENST00000573827 MUC5ACP98088 5654 aa4.93□□□□□ -1.62
SMG6-214ENST00000573827 MT3P25713 68 aa4.79□□□□□ -1.64
SMG6-214ENST00000573827 PRAC1Q96KF2 57 aa4.77□□□□□ -1.65
SMG6-214ENST00000573827 KRTAP5-1Q6L8H4 278 aa4.73□□□□□ -1.65
SMG6-214ENST00000573827 KRTAP9-9Q9BYP9 154 aa4.67□□□□□ -1.66
SMG6-214ENST00000573827 LCE1EQ5T753 118 aa4.46□□□□□ -1.7
SMG6-214ENST00000573827 KRTAP4-2Q9BYR5 136 aa4.27□□□□□ -1.73
SMG6-214ENST00000573827 LCE1CQ5T751 118 aa4.14□□□□□ -1.75
SMG6-214ENST00000573827 LCE1BQ5T7P3 118 aa4.14□□□□□ -1.75
SMG6-214ENST00000573827 LUZP6Q538Z0 58 aa3.94□□□□□ -1.78
SMG6-214ENST00000573827 LCE3DQ9BYE3 92 aa3.89□□□□□ -1.79
SMG6-214ENST00000573827 NDUFAF8A1L188 74 aa3.88□□□□□ -1.79
SMG6-214ENST00000573827 KRTAP4-12Q9BQ66 201 aa3.83□□□□□ -1.8
SMG6-214ENST00000573827 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.8□□□□□ -1.8
SMG6-214ENST00000573827 KRTAP5-11Q6L8G4 156 aa3.77□□□□□ -1.81
SMG6-214ENST00000573827 LCE1FQ5T754 118 aa3.65□□□□□ -1.83
SMG6-214ENST00000573827 LCE3EQ5T5B0 92 aa3.64□□□□□ -1.83
SMG6-214ENST00000573827 H3BS24 57 aa3.6□□□□□ -1.83
SMG6-214ENST00000573827 KRTAP21-2Q3LI59 83 aa3.51□□□□□ -1.85
SMG6-214ENST00000573827 A0A0A0MQY5 61 aa3.5□□□□□ -1.85
SMG6-214ENST00000573827 PHGR1C9JFL3 82 aa3.28□□□□□ -1.88
SMG6-214ENST00000573827 INE1O15225 51 aa3.28□□□□□ -1.88
SMG6-214ENST00000573827 KRTAP4-4Q9BYR3 166 aa3.17□□□□□ -1.9
SMG6-214ENST00000573827 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
SMG6-214ENST00000573827 PRM1P04553 51 aa2.69□□□□□ -1.98
SMG6-214ENST00000573827 KRTAP21-1Q3LI58 79 aa2.49□□□□□ -2.01
SMG6-214ENST00000573827 MUC16Q8WXI7 14507 aa2.17□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 110.2 ms