RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 SPATA8Q6RVD6 105 aa6.7□□□□□ -1.34
CCDC40-206ENST00000572083 RPS28P62857 69 aaKnown RBP6.69□□□□□ -1.34
CCDC40-206ENST00000572083 KRTAP4-7Q9BYR0 210 aa6.67□□□□□ -1.34
CCDC40-206ENST00000572083 KRTAP12-1P59990 96 aa6.65□□□□□ -1.34
CCDC40-206ENST00000572083 KRTAP9-9Q9BYP9 154 aa6.64□□□□□ -1.35
CCDC40-206ENST00000572083 KRTAP9-4Q9BYQ2 154 aa6.64□□□□□ -1.35
CCDC40-206ENST00000572083 PRO0628Q9UI54 55 aa6.64□□□□□ -1.35
CCDC40-206ENST00000572083 ANAPC13Q9BS18 74 aa6.62□□□□□ -1.35
CCDC40-206ENST00000572083 SNURFQ9Y675 71 aa6.62□□□□□ -1.35
CCDC40-206ENST00000572083 KRTAP5-5Q701N2 237 aaPredicted RBP6.57□□□□□ -1.36
CCDC40-206ENST00000572083 KRTAP23-1A1A580 65 aa6.56□□□□□ -1.36
CCDC40-206ENST00000572083 SERP1Q9Y6X1 66 aa6.55□□□□□ -1.36
CCDC40-206ENST00000572083 SPANXA2-OT1Q8N9U9 137 aa6.54□□□□□ -1.36
CCDC40-206ENST00000572083 KRTAP12-4P60329 112 aa6.52□□□□□ -1.37
CCDC40-206ENST00000572083 A0A1B0GU33 70 aa6.5□□□□□ -1.37
CCDC40-206ENST00000572083 TNP1P09430 55 aa6.48□□□□□ -1.37
CCDC40-206ENST00000572083 COA5Q86WW8 74 aa6.46□□□□□ -1.38
CCDC40-206ENST00000572083 SYNE1Q8NF91 8797 aaKnown RBP6.44□□□□□ -1.38
CCDC40-206ENST00000572083 CCDC179H3BU77 68 aa6.42□□□□□ -1.38
CCDC40-206ENST00000572083 KRTAP12-3P60328 96 aa6.4□□□□□ -1.38
CCDC40-206ENST00000572083 A8MU10 97 aa6.33□□□□□ -1.4
CCDC40-206ENST00000572083 SMIM26A0A096LP01 95 aa6.31□□□□□ -1.4
CCDC40-206ENST00000572083 TMEM258P61165 79 aa6.31□□□□□ -1.4
CCDC40-206ENST00000572083 KRTAP4-11Q9BYQ6 195 aa6.31□□□□□ -1.4
CCDC40-206ENST00000572083 PMAIP1Q13794 54 aa6.29□□□□□ -1.4
CCDC40-206ENST00000572083 MUC5ACP98088 5654 aa6.19□□□□□ -1.42
CCDC40-206ENST00000572083 AHNAKQ09666 5890 aaKnown RBP6.19□□□□□ -1.42
CCDC40-206ENST00000572083 SERP2Q8N6R1 65 aa6.17□□□□□ -1.42
CCDC40-206ENST00000572083 COX7CP15954 63 aa6.16□□□□□ -1.42
CCDC40-206ENST00000572083 MUC5BQ9HC84 5762 aaPredicted RBP6.16□□□□□ -1.42
CCDC40-206ENST00000572083 KRTAP5-8O75690 187 aa6.13□□□□□ -1.43
CCDC40-206ENST00000572083 A0A1B0GU69 56 aa6.12□□□□□ -1.43
CCDC40-206ENST00000572083 KRTAP5-2Q701N4 177 aa6.12□□□□□ -1.43
CCDC40-206ENST00000572083 BRK1Q8WUW1 75 aa6.03□□□□□ -1.44
CCDC40-206ENST00000572083 KRTAP15-1Q3LI76 137 aa6□□□□□ -1.45
CCDC40-206ENST00000572083 ATP5EP56381 51 aaPredicted RBP5.99□□□□□ -1.45
CCDC40-206ENST00000572083 KTN1-AS1Q86SY8 53 aa5.98□□□□□ -1.45
CCDC40-206ENST00000572083 KRTAP6-1Q3LI64 71 aa5.97□□□□□ -1.45
CCDC40-206ENST00000572083 H7BZZ5 65 aa5.95□□□□□ -1.46
CCDC40-206ENST00000572083 OBSCNQ5VST9 7968 aa5.93□□□□□ -1.46
CCDC40-206ENST00000572083 MT1AP04731 61 aa5.93□□□□□ -1.46
CCDC40-206ENST00000572083 A0A0A0MQY5 61 aa5.92□□□□□ -1.46
CCDC40-206ENST00000572083 KRTAP4-2Q9BYR5 136 aa5.9□□□□□ -1.46
CCDC40-206ENST00000572083 LCE3CQ5T5A8 94 aa5.83□□□□□ -1.48
CCDC40-206ENST00000572083 KRTAP25-1Q3LHN0 102 aa5.82□□□□□ -1.48
CCDC40-206ENST00000572083 KRTAP6-2Q3LI66 62 aa5.82□□□□□ -1.48
CCDC40-206ENST00000572083 Q1T7F1 81 aa5.74□□□□□ -1.49
CCDC40-206ENST00000572083 PRR15LQ9BU68 103 aa5.74□□□□□ -1.49
CCDC40-206ENST00000572083 PSPHP1O15172 72 aa5.68□□□□□ -1.5
CCDC40-206ENST00000572083 KRTAP5-1Q6L8H4 278 aa5.61□□□□□ -1.51
CCDC40-206ENST00000572083 KRTAP9-6A8MVA2 160 aa5.56□□□□□ -1.52
CCDC40-206ENST00000572083 LINC01558Q9Y6Z2 57 aa5.54□□□□□ -1.52
CCDC40-206ENST00000572083 UQCR11O14957 56 aa5.53□□□□□ -1.52
CCDC40-206ENST00000572083 CDC42SE1Q9NRR8 79 aa5.46□□□□□ -1.54
CCDC40-206ENST00000572083 MT3P25713 68 aa5.44□□□□□ -1.54
CCDC40-206ENST00000572083 MIR22HGQ0VDD5 57 aa5.37□□□□□ -1.55
CCDC40-206ENST00000572083 K7ERS5 55 aa5.36□□□□□ -1.55
CCDC40-206ENST00000572083 A6NED7 52 aa5.25□□□□□ -1.57
CCDC40-206ENST00000572083 ROMO1P60602 79 aa5.21□□□□□ -1.58
CCDC40-206ENST00000572083 PRAC1Q96KF2 57 aa5.16□□□□□ -1.58
CCDC40-206ENST00000572083 LCE1EQ5T753 118 aa5.1□□□□□ -1.59
CCDC40-206ENST00000572083 LUZP6Q538Z0 58 aa5.02□□□□□ -1.61
CCDC40-206ENST00000572083 LCE1BQ5T7P3 118 aa4.94□□□□□ -1.62
CCDC40-206ENST00000572083 NDUFAF8A1L188 74 aa4.77□□□□□ -1.65
CCDC40-206ENST00000572083 LCE1CQ5T751 118 aa4.76□□□□□ -1.65
CCDC40-206ENST00000572083 KRTAP5-11Q6L8G4 156 aa4.44□□□□□ -1.7
CCDC40-206ENST00000572083 LCE1FQ5T754 118 aa4.36□□□□□ -1.71
CCDC40-206ENST00000572083 PHGR1C9JFL3 82 aa4.29□□□□□ -1.72
CCDC40-206ENST00000572083 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.25□□□□□ -1.73
CCDC40-206ENST00000572083 INE1O15225 51 aa4.18□□□□□ -1.74
CCDC40-206ENST00000572083 LCE3DQ9BYE3 92 aa4.07□□□□□ -1.76
CCDC40-206ENST00000572083 KRTAP21-2Q3LI59 83 aa3.93□□□□□ -1.78
CCDC40-206ENST00000572083 KRTAP4-4Q9BYR3 166 aa3.73□□□□□ -1.81
CCDC40-206ENST00000572083 LCE3EQ5T5B0 92 aa3.72□□□□□ -1.81
CCDC40-206ENST00000572083 MUC19Q7Z5P9 8384 aa3.71□□□□□ -1.82
CCDC40-206ENST00000572083 KRTAP21-1Q3LI58 79 aa3.23□□□□□ -1.89
CCDC40-206ENST00000572083 MUC16Q8WXI7 14507 aa2.56□□□□□ -2
CCDC40-206ENST00000572083 PRM1P04553 51 aa2.5□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 90.8 ms