RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 HMCN2Q8NDA2 5059 aa1.58□□□□□ -2.16
SMG6-208ENST00000570874 SPRR5A0A1B0GTR4 108 aa1.56□□□□□ -2.16
SMG6-208ENST00000570874 KRTAP10-5P60370 271 aa1.55□□□□□ -2.16
SMG6-208ENST00000570874 FSIP2Q5CZC0 6907 aa1.54□□□□□ -2.16
SMG6-208ENST00000570874 A0A0D9SG42 100 aa1.54□□□□□ -2.16
SMG6-208ENST00000570874 KRTAP5-8O75690 187 aa1.54□□□□□ -2.16
SMG6-208ENST00000570874 KRTAP12-1P59990 96 aa1.54□□□□□ -2.16
SMG6-208ENST00000570874 MT1HP80294 61 aa1.54□□□□□ -2.16
SMG6-208ENST00000570874 LCE1FQ5T754 118 aa1.52□□□□□ -2.17
SMG6-208ENST00000570874 CRCT1Q9UGL9 99 aa1.5□□□□□ -2.17
SMG6-208ENST00000570874 M0R2T5 61 aa1.49□□□□□ -2.17
SMG6-208ENST00000570874 MT1FP04733 61 aa1.49□□□□□ -2.17
SMG6-208ENST00000570874 MT2AP02795 61 aa1.48□□□□□ -2.17
SMG6-208ENST00000570874 KRTAP10-12P60413 245 aa1.46□□□□□ -2.18
SMG6-208ENST00000570874 KRTAP10-10P60014 251 aa1.45□□□□□ -2.18
SMG6-208ENST00000570874 TNP1P09430 55 aa1.43□□□□□ -2.18
SMG6-208ENST00000570874 SPRR2GQ9BYE4 73 aa1.43□□□□□ -2.18
SMG6-208ENST00000570874 MT1BP07438 61 aa1.42□□□□□ -2.18
SMG6-208ENST00000570874 SSPOA2VEC9 5147 aa1.41□□□□□ -2.18
SMG6-208ENST00000570874 KRTAP19-8Q3LI54 63 aa1.4□□□□□ -2.19
SMG6-208ENST00000570874 LCE3CQ5T5A8 94 aa1.4□□□□□ -2.19
SMG6-208ENST00000570874 NEBP20929 6669 aa1.39□□□□□ -2.19
SMG6-208ENST00000570874 GPR98Q8WXG9 6306 aa1.37□□□□□ -2.19
SMG6-208ENST00000570874 SYNE2Q8WXH0 6885 aaKnown RBP1.37□□□□□ -2.19
SMG6-208ENST00000570874 MT1XP80297 61 aa1.37□□□□□ -2.19
SMG6-208ENST00000570874 KRTAP6-3Q3LI67 103 aa1.36□□□□□ -2.19
SMG6-208ENST00000570874 KRTAP12-4P60329 112 aa1.35□□□□□ -2.19
SMG6-208ENST00000570874 LCE3AQ5TA76 89 aa1.35□□□□□ -2.19
SMG6-208ENST00000570874 KRTAP8-1Q8IUC2 63 aa1.3□□□□□ -2.2
SMG6-208ENST00000570874 HMCN1Q96RW7 5635 aa1.29□□□□□ -2.2
SMG6-208ENST00000570874 FCGBPQ9Y6R7 5405 aaPredicted RBP1.28□□□□□ -2.21
SMG6-208ENST00000570874 USH2AO75445 5202 aa1.27□□□□□ -2.21
SMG6-208ENST00000570874 MACF1Q9UPN3 7388 aaKnown RBP1.27□□□□□ -2.21
SMG6-208ENST00000570874 KRTAP20-1Q3LI63 56 aa1.27□□□□□ -2.21
SMG6-208ENST00000570874 KRTAP19-6Q3LI70 58 aa1.27□□□□□ -2.21
SMG6-208ENST00000570874 LCE3EQ5T5B0 92 aa1.27□□□□□ -2.21
SMG6-208ENST00000570874 MUC12Q9UKN1 5478 aa1.26□□□□□ -2.21
SMG6-208ENST00000570874 KMT2DO14686 5537 aa1.26□□□□□ -2.21
SMG6-208ENST00000570874 KRTAP19-5Q3LI72 72 aa1.25□□□□□ -2.21
SMG6-208ENST00000570874 KRTAP12-3P60328 96 aa1.24□□□□□ -2.21
SMG6-208ENST00000570874 KRTAP5-5Q701N2 237 aaPredicted RBP1.24□□□□□ -2.21
SMG6-208ENST00000570874 KRTAP19-7Q3SYF9 63 aa1.22□□□□□ -2.21
SMG6-208ENST00000570874 LCE1CQ5T751 118 aa1.21□□□□□ -2.22
SMG6-208ENST00000570874 LCE1BQ5T7P3 118 aa1.21□□□□□ -2.22
SMG6-208ENST00000570874 LCE3DQ9BYE3 92 aa1.2□□□□□ -2.22
SMG6-208ENST00000570874 MT1EP04732 61 aa1.18□□□□□ -2.22
SMG6-208ENST00000570874 KRTAP2-3P0C7H8 128 aa1.17□□□□□ -2.22
SMG6-208ENST00000570874 MT1LQ93083 61 aa1.17□□□□□ -2.22
SMG6-208ENST00000570874 KRTAP2-4Q9BYR9 128 aa1.17□□□□□ -2.22
SMG6-208ENST00000570874 MUC19Q7Z5P9 8384 aa1.16□□□□□ -2.22
SMG6-208ENST00000570874 MDN1Q9NU22 5596 aa1.16□□□□□ -2.22
SMG6-208ENST00000570874 SPRR2FQ96RM1 72 aa1.15□□□□□ -2.23
SMG6-208ENST00000570874 AHNAK2Q8IVF2 5795 aa1.12□□□□□ -2.23
SMG6-208ENST00000570874 KRTAP19-3Q7Z4W3 81 aa1.12□□□□□ -2.23
SMG6-208ENST00000570874 MT1MQ8N339 61 aa1.12□□□□□ -2.23
SMG6-208ENST00000570874 KRTAP2-1Q9BYU5 128 aa1.12□□□□□ -2.23
SMG6-208ENST00000570874 MT1GP13640 62 aa1.09□□□□□ -2.23
SMG6-208ENST00000570874 SPRR2EP22531 72 aa1.09□□□□□ -2.23
SMG6-208ENST00000570874 SPRR2BP35325 72 aa1.09□□□□□ -2.23
SMG6-208ENST00000570874 SPRR2AP35326 72 aa1.09□□□□□ -2.23
SMG6-208ENST00000570874 KRTAP5-7Q6L8G8 165 aa1.06□□□□□ -2.24
SMG6-208ENST00000570874 KRTAP5-10Q6L8G5 202 aa1.05□□□□□ -2.24
SMG6-208ENST00000570874 DSTQ03001 7570 aaKnown RBP1.05□□□□□ -2.24
SMG6-208ENST00000570874 AHNAKQ09666 5890 aaKnown RBP1.05□□□□□ -2.24
SMG6-208ENST00000570874 SPRR2DP22532 72 aa1.04□□□□□ -2.24
SMG6-208ENST00000570874 MUC5BQ9HC84 5762 aaPredicted RBP1.02□□□□□ -2.25
SMG6-208ENST00000570874 KRTAP6-1Q3LI64 71 aa1.01□□□□□ -2.25
SMG6-208ENST00000570874 MT1AP04731 61 aa1□□□□□ -2.25
SMG6-208ENST00000570874 MUC5ACP98088 5654 aa0.95□□□□□ -2.26
SMG6-208ENST00000570874 SYNE1Q8NF91 8797 aaKnown RBP0.95□□□□□ -2.26
SMG6-208ENST00000570874 PRM1P04553 51 aa0.95□□□□□ -2.26
SMG6-208ENST00000570874 MT4P47944 62 aa0.92□□□□□ -2.26
SMG6-208ENST00000570874 KRTAP21-2Q3LI59 83 aa0.91□□□□□ -2.26
SMG6-208ENST00000570874 KRTAP6-2Q3LI66 62 aa0.91□□□□□ -2.26
SMG6-208ENST00000570874 KRTAP20-2Q3LI61 65 aa0.88□□□□□ -2.27
SMG6-208ENST00000570874 KRTAP21-1Q3LI58 79 aa0.73□□□□□ -2.29
SMG6-208ENST00000570874 PHGR1C9JFL3 82 aa0.59□□□□□ -2.31
SMG6-208ENST00000570874 MUC16Q8WXI7 14507 aa0.41□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 30.6 ms