RNA–Protein interactions for RNA: ENST00000570139.1

CNOT1-222, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 2

Gene CNOT1, Length 458 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-222	ENST00000570139	CDC42SE1	Q9NRR8	79 aa		3.19	□□□□□ -1.9
CNOT1-222	ENST00000570139	KRTAP10-10	P60014	251 aa		3.18	□□□□□ -1.9
CNOT1-222	ENST00000570139	MIR22HG	Q0VDD5	57 aa		3.18	□□□□□ -1.9
CNOT1-222	ENST00000570139	SPATA8	Q6RVD6	105 aa		3.17	□□□□□ -1.9
CNOT1-222	ENST00000570139	BRK1	Q8WUW1	75 aa		3.15	□□□□□ -1.91
CNOT1-222	ENST00000570139	LCE3D	Q9BYE3	92 aa		3.15	□□□□□ -1.91
CNOT1-222	ENST00000570139		A6NN06	94 aa		3.09	□□□□□ -1.91
CNOT1-222	ENST00000570139	MT2A	P02795	61 aa		3.09	□□□□□ -1.91
CNOT1-222	ENST00000570139	KRTAP13-4	Q3LI77	160 aa		3.08	□□□□□ -1.92
CNOT1-222	ENST00000570139	SPRR2G	Q9BYE4	73 aa		3.07	□□□□□ -1.92
CNOT1-222	ENST00000570139	MT1F	P04733	61 aa		3.06	□□□□□ -1.92
CNOT1-222	ENST00000570139	ROMO1	P60602	79 aa		3.05	□□□□□ -1.92
CNOT1-222	ENST00000570139		A0A0D9SG42	100 aa		3.04	□□□□□ -1.92
CNOT1-222	ENST00000570139	KRTAP5-8	O75690	187 aa		3.02	□□□□□ -1.93
CNOT1-222	ENST00000570139	KRTAP12-1	P59990	96 aa		3.01	□□□□□ -1.93
CNOT1-222	ENST00000570139	KRTAP19-8	Q3LI54	63 aa		2.98	□□□□□ -1.93
CNOT1-222	ENST00000570139	PLAC4	Q8WY50	150 aa		2.98	□□□□□ -1.93
CNOT1-222	ENST00000570139	PP632	Q6XCG6	107 aa		2.94	□□□□□ -1.94
CNOT1-222	ENST00000570139	LCE3A	Q5TA76	89 aa		2.93	□□□□□ -1.94
CNOT1-222	ENST00000570139	MT1B	P07438	61 aa		2.89	□□□□□ -1.95
CNOT1-222	ENST00000570139	KRTAP6-3	Q3LI67	103 aa		2.87	□□□□□ -1.95
CNOT1-222	ENST00000570139	SSPO	A2VEC9	5147 aa		2.86	□□□□□ -1.95
CNOT1-222	ENST00000570139	USH2A	O75445	5202 aa		2.86	□□□□□ -1.95
CNOT1-222	ENST00000570139	C10orf95	Q9H7T3	257 aa		2.83	□□□□□ -1.96
CNOT1-222	ENST00000570139	TNP1	P09430	55 aa		2.82	□□□□□ -1.96
CNOT1-222	ENST00000570139	MT1X	P80297	61 aa		2.8	□□□□□ -1.96
CNOT1-222	ENST00000570139	SYNE2	Q8WXH0	6885 aa	Known RBP	2.79	□□□□□ -1.96
CNOT1-222	ENST00000570139	KRTAP19-6	Q3LI70	58 aa		2.78	□□□□□ -1.96
CNOT1-222	ENST00000570139	MACF1	Q9UPN3	7388 aa	Known RBP	2.78	□□□□□ -1.96
CNOT1-222	ENST00000570139	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	2.76	□□□□□ -1.97
CNOT1-222	ENST00000570139	INE1	O15225	51 aa		2.74	□□□□□ -1.97
CNOT1-222	ENST00000570139	KRTAP20-1	Q3LI63	56 aa		2.73	□□□□□ -1.97
CNOT1-222	ENST00000570139	NEB	P20929	6669 aa		2.7	□□□□□ -1.98
CNOT1-222	ENST00000570139	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.7	□□□□□ -1.98
CNOT1-222	ENST00000570139	KRTAP12-3	P60328	96 aa		2.67	□□□□□ -1.98
CNOT1-222	ENST00000570139	LCE1C	Q5T751	118 aa		2.64	□□□□□ -1.99
CNOT1-222	ENST00000570139	LCE1B	Q5T7P3	118 aa		2.64	□□□□□ -1.99
CNOT1-222	ENST00000570139	KRTAP8-1	Q8IUC2	63 aa		2.64	□□□□□ -1.99
CNOT1-222	ENST00000570139	MUC12	Q9UKN1	5478 aa		2.55	□□□□□ -2
CNOT1-222	ENST00000570139	GPR98	Q8WXG9	6306 aa		2.55	□□□□□ -2
CNOT1-222	ENST00000570139	KRTAP19-5	Q3LI72	72 aa		2.52	□□□□□ -2.01
CNOT1-222	ENST00000570139	KMT2D	O14686	5537 aa		2.51	□□□□□ -2.01
CNOT1-222	ENST00000570139	KRTAP2-3	P0C7H8	128 aa		2.51	□□□□□ -2.01
CNOT1-222	ENST00000570139	KRTAP2-4	Q9BYR9	128 aa		2.51	□□□□□ -2.01
CNOT1-222	ENST00000570139	KRTAP19-7	Q3SYF9	63 aa		2.5	□□□□□ -2.01
CNOT1-222	ENST00000570139	KRTAP12-4	P60329	112 aa		2.48	□□□□□ -2.01
CNOT1-222	ENST00000570139	MT1E	P04732	61 aa		2.47	□□□□□ -2.01
CNOT1-222	ENST00000570139	MDN1	Q9NU22	5596 aa		2.45	□□□□□ -2.02
CNOT1-222	ENST00000570139	SPRR2F	Q96RM1	72 aa		2.44	□□□□□ -2.02
CNOT1-222	ENST00000570139	MT1L	Q93083	61 aa		2.42	□□□□□ -2.02
CNOT1-222	ENST00000570139	KRTAP19-3	Q7Z4W3	81 aa		2.4	□□□□□ -2.03
CNOT1-222	ENST00000570139	KRTAP2-1	Q9BYU5	128 aa		2.4	□□□□□ -2.03
CNOT1-222	ENST00000570139	MT1G	P13640	62 aa		2.39	□□□□□ -2.03
CNOT1-222	ENST00000570139	MT1M	Q8N339	61 aa		2.33	□□□□□ -2.04
CNOT1-222	ENST00000570139	SPRR2E	P22531	72 aa		2.32	□□□□□ -2.04
CNOT1-222	ENST00000570139	SPRR2B	P35325	72 aa		2.32	□□□□□ -2.04
CNOT1-222	ENST00000570139	SPRR2A	P35326	72 aa		2.32	□□□□□ -2.04
CNOT1-222	ENST00000570139	MUC19	Q7Z5P9	8384 aa		2.29	□□□□□ -2.04
CNOT1-222	ENST00000570139	SPRR2D	P22532	72 aa		2.25	□□□□□ -2.05
CNOT1-222	ENST00000570139	DST	Q03001	7570 aa	Known RBP	2.19	□□□□□ -2.06
CNOT1-222	ENST00000570139	AHNAK2	Q8IVF2	5795 aa		2.16	□□□□□ -2.06
CNOT1-222	ENST00000570139	KRTAP5-10	Q6L8G5	202 aa		2.15	□□□□□ -2.07
CNOT1-222	ENST00000570139	KRTAP5-7	Q6L8G8	165 aa		2.13	□□□□□ -2.07
CNOT1-222	ENST00000570139	HMCN1	Q96RW7	5635 aa		2.1	□□□□□ -2.07
CNOT1-222	ENST00000570139	MT1A	P04731	61 aa		2.08	□□□□□ -2.08
CNOT1-222	ENST00000570139	KRTAP6-1	Q3LI64	71 aa		2.01	□□□□□ -2.09
CNOT1-222	ENST00000570139	MT4	P47944	62 aa		1.96	□□□□□ -2.1
CNOT1-222	ENST00000570139	AHNAK	Q09666	5890 aa	Known RBP	1.94	□□□□□ -2.1
CNOT1-222	ENST00000570139	SYNE1	Q8NF91	8797 aa	Known RBP	1.94	□□□□□ -2.1
CNOT1-222	ENST00000570139	KRTAP21-2	Q3LI59	83 aa		1.93	□□□□□ -2.1
CNOT1-222	ENST00000570139	KRTAP20-2	Q3LI61	65 aa		1.89	□□□□□ -2.11
CNOT1-222	ENST00000570139	MUC5B	Q9HC84	5762 aa	Predicted RBP	1.88	□□□□□ -2.11
CNOT1-222	ENST00000570139	MUC5AC	P98088	5654 aa		1.87	□□□□□ -2.11
CNOT1-222	ENST00000570139	KRTAP6-2	Q3LI66	62 aa		1.86	□□□□□ -2.11
CNOT1-222	ENST00000570139	PRM1	P04553	51 aa		1.48	□□□□□ -2.17
CNOT1-222	ENST00000570139	PHGR1	C9JFL3	82 aa		1.28	□□□□□ -2.2
CNOT1-222	ENST00000570139	MUC16	Q8WXI7	14507 aa		1.06	□□□□□ -2.24
CNOT1-222	ENST00000570139	KRTAP21-1	Q3LI58	79 aa		0.99	□□□□□ -2.25

Retrieved 78 of 20,778 RNA–protein pairs in 38.2 ms