RNA–Protein interactions for RNA: ENST00000569764.1

SMG1-217, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 4,187 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-217ENST00000569764 KRTAP2-3P0C7H8 128 aa2.64□□□□□ -1.99
SMG1-217ENST00000569764 KRTAP2-4Q9BYR9 128 aa2.64□□□□□ -1.99
SMG1-217ENST00000569764 LCE4AQ5TA78 99 aa2.64□□□□□ -1.99
SMG1-217ENST00000569764 LCE1AQ5T7P2 110 aa2.62□□□□□ -1.99
SMG1-217ENST00000569764 KRTAP10-7P60409 375 aaPredicted RBP2.59□□□□□ -2
SMG1-217ENST00000569764 KRTAP9-9Q9BYP9 154 aa2.58□□□□□ -2
SMG1-217ENST00000569764 KMT2DO14686 5537 aa2.58□□□□□ -2
SMG1-217ENST00000569764 MT1BP07438 61 aa2.56□□□□□ -2
SMG1-217ENST00000569764 FSIP2Q5CZC0 6907 aa2.55□□□□□ -2
SMG1-217ENST00000569764 MT3P25713 68 aa2.54□□□□□ -2
SMG1-217ENST00000569764 LCE3EQ5T5B0 92 aa2.53□□□□□ -2
SMG1-217ENST00000569764 KRTAP2-1Q9BYU5 128 aa2.53□□□□□ -2
SMG1-217ENST00000569764 SSPOA2VEC9 5147 aa2.52□□□□□ -2.01
SMG1-217ENST00000569764 LCE1DQ5T752 114 aa2.5□□□□□ -2.01
SMG1-217ENST00000569764 MT1XP80297 61 aa2.5□□□□□ -2.01
SMG1-217ENST00000569764 KRTAP12-4P60329 112 aa2.45□□□□□ -2.02
SMG1-217ENST00000569764 MT1GP13640 62 aa2.44□□□□□ -2.02
SMG1-217ENST00000569764 KRTAP12-3P60328 96 aa2.44□□□□□ -2.02
SMG1-217ENST00000569764 LCE3BQ5TA77 95 aa2.44□□□□□ -2.02
SMG1-217ENST00000569764 LCE3AQ5TA76 89 aa2.41□□□□□ -2.02
SMG1-217ENST00000569764 LCE3DQ9BYE3 92 aa2.39□□□□□ -2.03
SMG1-217ENST00000569764 GPR98Q8WXG9 6306 aa2.37□□□□□ -2.03
SMG1-217ENST00000569764 KRTAP4-8A0A0G2JLE6 195 aa2.36□□□□□ -2.03
SMG1-217ENST00000569764 KRTAP4-8Q9BYQ9 185 aa2.36□□□□□ -2.03
SMG1-217ENST00000569764 FCGBPQ9Y6R7 5405 aaPredicted RBP2.34□□□□□ -2.03
SMG1-217ENST00000569764 KRTAP19-3Q7Z4W3 81 aa2.34□□□□□ -2.04
SMG1-217ENST00000569764 KRTAP5-9P26371 169 aa2.32□□□□□ -2.04
SMG1-217ENST00000569764 MACF1Q9UPN3 7388 aaKnown RBP2.31□□□□□ -2.04
SMG1-217ENST00000569764 SYNE2Q8WXH0 6885 aaKnown RBP2.31□□□□□ -2.04
SMG1-217ENST00000569764 MUC12Q9UKN1 5478 aa2.3□□□□□ -2.04
SMG1-217ENST00000569764 NEBP20929 6669 aa2.29□□□□□ -2.04
SMG1-217ENST00000569764 KRTAP19-5Q3LI72 72 aa2.27□□□□□ -2.05
SMG1-217ENST00000569764 KRTAP19-7Q3SYF9 63 aa2.24□□□□□ -2.05
SMG1-217ENST00000569764 KRTAP4-7Q9BYR0 210 aa2.21□□□□□ -2.05
SMG1-217ENST00000569764 MT1EP04732 61 aa2.2□□□□□ -2.06
SMG1-217ENST00000569764 MDN1Q9NU22 5596 aa2.18□□□□□ -2.06
SMG1-217ENST00000569764 MT4P47944 62 aa2.18□□□□□ -2.06
SMG1-217ENST00000569764 DSTQ03001 7570 aaKnown RBP2.17□□□□□ -2.06
SMG1-217ENST00000569764 KRTAP9-6A8MVA2 160 aa2.16□□□□□ -2.06
SMG1-217ENST00000569764 OBSCNQ5VST9 7968 aa2.15□□□□□ -2.06
SMG1-217ENST00000569764 MT1MQ8N339 61 aa2.13□□□□□ -2.07
SMG1-217ENST00000569764 MT1LQ93083 61 aa2.13□□□□□ -2.07
SMG1-217ENST00000569764 KRTAP4-3Q9BYR4 195 aa2.12□□□□□ -2.07
SMG1-217ENST00000569764 MUC19Q7Z5P9 8384 aa2.1□□□□□ -2.07
SMG1-217ENST00000569764 LOC100996750A0A140TA64 210 aa2.09□□□□□ -2.08
SMG1-217ENST00000569764 KRTAP4-6Q9BYQ5 205 aa2.09□□□□□ -2.08
SMG1-217ENST00000569764 SYNE1Q8NF91 8797 aaKnown RBP2.06□□□□□ -2.08
SMG1-217ENST00000569764 KRTAP4-9Q9BYQ8 210 aa2.01□□□□□ -2.09
SMG1-217ENST00000569764 PRM1P04553 51 aa2.01□□□□□ -2.09
SMG1-217ENST00000569764 MT1AP04731 61 aa1.98□□□□□ -2.09
SMG1-217ENST00000569764 KRTAP5-4Q6L8H1 288 aa1.91□□□□□ -2.1
SMG1-217ENST00000569764 KRTAP20-2Q3LI61 65 aa1.85□□□□□ -2.11
SMG1-217ENST00000569764 KRTAP6-1Q3LI64 71 aa1.84□□□□□ -2.12
SMG1-217ENST00000569764 KRTAP5-5Q701N2 237 aaPredicted RBP1.84□□□□□ -2.12
SMG1-217ENST00000569764 KRTAP4-12Q9BQ66 201 aa1.84□□□□□ -2.12
SMG1-217ENST00000569764 HMCN1Q96RW7 5635 aa1.83□□□□□ -2.12
SMG1-217ENST00000569764 KRTAP5-3Q6L8H2 238 aa1.83□□□□□ -2.12
SMG1-217ENST00000569764 AHNAK2Q8IVF2 5795 aa1.82□□□□□ -2.12
SMG1-217ENST00000569764 MUC5BQ9HC84 5762 aaPredicted RBP1.77□□□□□ -2.13
SMG1-217ENST00000569764 LCE1BQ5T7P3 118 aa1.76□□□□□ -2.13
SMG1-217ENST00000569764 KRTAP4-11Q9BYQ6 195 aa1.76□□□□□ -2.13
SMG1-217ENST00000569764 KRTAP5-7Q6L8G8 165 aa1.75□□□□□ -2.13
SMG1-217ENST00000569764 KRTAP6-2Q3LI66 62 aa1.73□□□□□ -2.13
SMG1-217ENST00000569764 LCE1CQ5T751 118 aa1.71□□□□□ -2.14
SMG1-217ENST00000569764 AHNAKQ09666 5890 aaKnown RBP1.67□□□□□ -2.14
SMG1-217ENST00000569764 KRTAP5-10Q6L8G5 202 aa1.64□□□□□ -2.15
SMG1-217ENST00000569764 KRTAP4-2Q9BYR5 136 aa1.62□□□□□ -2.15
SMG1-217ENST00000569764 MUC5ACP98088 5654 aa1.55□□□□□ -2.16
SMG1-217ENST00000569764 KRTAP5-2Q701N4 177 aa1.53□□□□□ -2.16
SMG1-217ENST00000569764 KRTAP5-8O75690 187 aa1.53□□□□□ -2.16
SMG1-217ENST00000569764 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.36□□□□□ -2.19
SMG1-217ENST00000569764 KRTAP5-1Q6L8H4 278 aa1.35□□□□□ -2.19
SMG1-217ENST00000569764 PHGR1C9JFL3 82 aa1.31□□□□□ -2.2
SMG1-217ENST00000569764 KRTAP5-11Q6L8G4 156 aa1.28□□□□□ -2.2
SMG1-217ENST00000569764 KRTAP21-1Q3LI58 79 aa1.21□□□□□ -2.22
SMG1-217ENST00000569764 KRTAP21-2Q3LI59 83 aa1.2□□□□□ -2.22
SMG1-217ENST00000569764 KRTAP4-4Q9BYR3 166 aa1.13□□□□□ -2.23
SMG1-217ENST00000569764 MUC16Q8WXI7 14507 aa0.73□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 6.1 ms